Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1853 ATGCTCCAACAGCGTCTGCTTACGTATTTTAGTGTCGTTGTCTATTCGACGATTCTGACTTCGCGGGTTTGGGCATTCACTAATCCGCCGGATGTTATAGCTCTTCAGGGTCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCCTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAGCCTCATCGATTTGAAGCAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTCAGCCAAAATCTTCCACATACTTTATCTTACATGGGACGTCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTAATTGACTTGATTGGGGGCAATAGATTTCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGCACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGGGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCGGGTGGAATTGTTCTCCTGGTTGGAGGGTTAACACTAGTAGTTAGCTTTGCAGCTCTCTTTTTCGTATTTTCCATGAAGAAAGTGCATGACAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCGTCTACTGCAACAGACGAGAGCTCACAAAGCTTTCCCCTGAGTTCACTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTGACAGAGCTTCAATCCACTACAAACAAGTTTAGTCAAGAGAATCTTTTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAATATCAACATGGGAGAGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATTGTTACACTGCTTGGATATTGTCTAGAGCATGGACAACATATACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCCAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGACGCCTCATATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACCAATAGAGTTAAAACGAAGGCTTCTGAGATAGTCAGTGGTGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAACCGAGGAAGGAGCAATTGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCACGCTTTGTCGATATTATCTCCCTTTGTATACAGTCTGTGAAAGAATTTCGACCGCCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAACGTGCTATAGCGGATGGAACTGAAGTGGATCCTTTTGAGAAATCCTTTCGTTCTACCAATACTGGCTTTCTCCGTGCGTTACTGTATTCCAGTGTCCTTGTCTTCTTGGCAATTCTGACTTCAGTCGTTCAGTGCTTTACTGACCCTTTCGATGTTATAGCTCTTCTCAATCTGTATAGTACCCTAAATTACCCACCTGAGCTTAAAGGATGGAGAACAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTGTTTTGTGTTGGTTCTTCTGTAATAAACCTTAAACTTAATAGACTAAACCTATCCGGGAATCTTGGAGACCAGCTTTATCTTCTCCATAATTTGAAGCAACTGGATGCTAGTTCCAATTCAATTCTGGGTGAATTTCCTTCTGGCTTACCCCCAAATGTCACTTCTGTGAATCTAAGCCATAATGTCCTATCTGGCCCCATCGGGAATGCTTTTTCTGGCTTACAAAATCTTGTGGAGATGGATCTGTCATATAACGATTTCACTGGAGATTTACCAAGTTCATTTGCTTCCTTGACTAATATCAATAGACTGTTCTTGCAGAAAAACAAATTCACAGGATCGGTTTCCTACTTATCTGACCTTCCATTGACTGATTTGAACATCCAAGACAATTACTTTAGTGGCACTATTCCAGAGCATTTCAAGACAGTTCCAAATTTATGGATTGGGGGAAATAGGTTCGATGTAAGTAATTCTCCACCCTGGGATTTTTCTGTGGAAACAACACCTTTGACGCGAAACAATAGTAGCTTTCCATTAACAGAACCGATTATCATTGAGAAATGTCCCTACAAGAAAAAGGGGGGGAAAGGGGGGGAAAGATTGGGCCCTGCTGGAATAGCTATAGTGGCTGGTGGAGGTGGTTTTGTAATAATCTTTGCAGCTCTCTTTGTTGCAATCTGCAACACACAAATATGTGCAAAGCAAAGGAGCATGAAGCATGTCAACGTGTCTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACCGCACCAGTTGGCAGCCCCCATATCTTGCCTCTCAGTTCTCCAGACATAGGTGGCGGTCTGAATCATGCATGTCCTACTCGTCATGCTAGAACTGAGAGGGGATGTAGCAGAAGTTTCTCTAAGAGATCCTGGTTCCCAGAAAAAACAAAAACTTACACTGTCACAGAGCTCGAATCCGCTACTAACAAGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCCGATGGCCAAATTTTGGCTGTGAAGAGGGTTGATATGGCGGCACTCTCTTTCACACAAGAACAACAGTTTCTGGATGTGGTCTGCACTGTATCCCGTTTGAGGCACCCTAACATTGTTAGCCTTCTTGGATACAGTGTAGAGAATGGACAACATTTACTAGCCTATGAGTACGTCAGGAATCTGTCTCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCGTCGAGTGTTCGAATCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCCCCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCATGCTTGATGAAGAATTCATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGCTGCTCAAATTGCTTTTGCTGACACTGGCTACTTTGCACCTGAATATGGCCAATCTGGGATTGATCATACCAAAAGTGATGTGTATGCATTCGGAGTGTTGTTTCTGGAGCTTATTACCGCAAAGAAACCAAACGATTTGAGACCAGGGATCGAGCAATCTCTGTCAAGATGGGCGTCATTTCAGCTTCACGACTGTGGGAATCTAGATGAGATTATTGATCCTGAGATTAAAGGAACATTATCCTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCTGTAATGGAACGTCGGCCACCCATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAAAGAAGGTTTGAGGTGGAAAAACGTGCTGCAGCGGAAGGTAAAGTAGTTGACACTTTCGAGAAATCCTTCCATACAACTAACACAGGGATTGTAAGACATCCTAACAAGACTGTCATTGGCATCAATGCTATCAATCGTCGCTTCTGGGTTCGTGCTATGATGGAGGACGCATCAAAGAACGGCGTCCTGGCCGTCCAAACGCTAAGGAACAACATAATGGCGTCTACTCTTCTGGCATCGACGGCGATAATGCTCTGTTCTCTAATCGCCGTCTTAATGACAAGCGGCGGCCACAGCGAATCTCCATTAGTCGTACTCGGCGACAGAAGCCAGTTCAGTTTCTCCATCAAATTTTTCGCCATTTTGCTTTGCTTTCTCGTAGCATTTTTGTTCAATGTTCAATCCATTAGGTATTATAGCCATGCCAGCATTCTGATCAACACGCCTTTCAAGAAAATTGCAATCGACGATCATAATCAACGGCTCACGGCGGAATACGTGGCGGCGACGGTGAACAGAGGCAGCTATTTCTGGTCGTTGGGATTGCGAGCTTTCTACTTCTCGTTTCCTCTGTTTTTGTGGATTTTTGGACCTATTCCTATGTTTTCTTCTTCATTTCTGCTTGTTTTTATGCTTTATTTCCTTGATGCTACTTTTGAATTCTGCTGGACGGATGGGAATTTGGATTACCTTCCTCAAAGAGACGAAGAAGAGGAAATTGGGAAATAG 4803 43.74 MLQQRLLTYFSVVVYSTILTSRVWAFTNPPDVIALQGLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSSLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHFSQNLPHTLSYMGRLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLIGGNRFRPEVNSPPWDFPLEKAPMVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGIVLLVGGLTLVVSFAALFFVFSMKKVHDKKINLKIGNMLPRSLPLGKAEDGSSTATDESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLTELQSTTNKFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHPNIVTLLGYCLEHGQHILGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELTPHICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQLLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQSVKEFRPPMSEIVEHLTNLQRKMEMVKRAIADGTEVDPFEKSFRSTNTGFLRALLYSSVLVFLAILTSVVQCFTDPFDVIALLNLYSTLNYPPELKGWRTDGGDPCDGTWTGVFCVGSSVINLKLNRLNLSGNLGDQLYLLHNLKQLDASSNSILGEFPSGLPPNVTSVNLSHNVLSGPIGNAFSGLQNLVEMDLSYNDFTGDLPSSFASLTNINRLFLQKNKFTGSVSYLSDLPLTDLNIQDNYFSGTIPEHFKTVPNLWIGGNRFDVSNSPPWDFSVETTPLTRNNSSFPLTEPIIIEKCPYKKKGGKGGERLGPAGIAIVAGGGGFVIIFAALFVAICNTQICAKQRSMKHVNVSLPVSKAEDGYSTAPVGSPHILPLSSPDIGGGLNHACPTRHARTERGCSRSFSKRSWFPEKTKTYTVTELESATNKYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMAALSFTQEQQFLDVVCTVSRLRHPNIVSLLGYSVENGQHLLAYEYVRNLSLDDALHSVAHNPLSSSVRIQIAHGVAKALDYLHNAFFPPFAHCNLKAANIMLDEEFMPKICDCGLSVLKPLAAQIAFADTGYFAPEYGQSGIDHTKSDVYAFGVLFLELITAKKPNDLRPGIEQSLSRWASFQLHDCGNLDEIIDPEIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRRFEVEKRAAAEGKVVDTFEKSFHTTNTGIVRHPNKTVIGINAINRRFWVRAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSGGHSESPLVVLGDRSQFSFSIKFFAILLCFLVAFLFNVQSIRYYSHASILINTPFKKIAIDDHNQRLTAEYVAATVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFSSSFLLVFMLYFLDATFEFCWTDGNLDYLPQRDEEEEIGK 1600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33120983 33135742 - CrPI670011_10g018530.1 Cre10g1853 511155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1853 1600 Gene3D Ribonuclease Inhibitor 728 952 IPR032675 -
Cre10g1853 1600 Gene3D Ribonuclease Inhibitor 28 236 IPR032675 -
Cre10g1853 1600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 819 930 - -
Cre10g1853 1600 MobiDBLite consensus disorder prediction 327 341 - -
Cre10g1853 1600 FunFam Leucine-rich repeat receptor-like protein kinase 471 680 - -
Cre10g1853 1600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1165 1368 - -
Cre10g1853 1600 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 358 470 - -
Cre10g1853 1600 Gene3D Transferase(Phosphotransferase) domain 1 471 690 - -
Cre10g1853 1600 Gene3D Transferase(Phosphotransferase) domain 1 1165 1380 - -
Cre10g1853 1600 Pfam Protein of unknown function, DUF599 1387 1577 IPR006747 -
Cre10g1853 1600 Pfam Protein kinase domain 394 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 Pfam Protein kinase domain 1087 1348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 SUPERFAMILY Protein kinase-like (PK-like) 1062 1353 IPR011009 -
Cre10g1853 1600 Gene3D Phosphorylase Kinase; domain 1 356 470 - -
Cre10g1853 1600 Gene3D Phosphorylase Kinase; domain 1 1049 1164 - -
Cre10g1853 1600 SMART LRR_typ_2 140 163 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 840 863 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 94 118 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 164 187 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 794 822 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 188 211 IPR003591 -
Cre10g1853 1600 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cre10g1853 1600 Pfam Leucine rich repeat N-terminal domain 731 768 IPR013210 -
Cre10g1853 1600 SUPERFAMILY L domain-like 725 914 - -
Cre10g1853 1600 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Cre10g1853 1600 Pfam Leucine rich repeat 817 877 IPR001611 GO:0005515(InterPro)
Cre10g1853 1600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 228 - -
Cre10g1853 1600 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 1052 1164 - -
Cre10g1853 1600 Pfam Leucine Rich Repeat 97 115 IPR001611 GO:0005515(InterPro)
Cre10g1853 1600 ProSiteProfiles Protein kinase domain profile. 393 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 SUPERFAMILY L domain-like 27 206 - -
Cre10g1853 1600 SUPERFAMILY Protein kinase-like (PK-like) 370 670 IPR011009 -
Cre10g1853 1600 ProSiteProfiles Protein kinase domain profile. 1087 1361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 MobiDBLite consensus disorder prediction 319 341 - -
Cre10g1853 1600 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 673 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1421 Cre-Chr1:27450068 Cre10g1853 Cre-Chr10:33120983 1.80E-44 dispersed
Cre06g2319 Cre-Chr6:31141849 Cre10g1853 Cre-Chr10:33120983 1.10E-51 dispersed
Cre09g0136 Cre-Chr9:1624505 Cre10g1853 Cre-Chr10:33120983 3.30E-87 dispersed
Cre10g1853 Cre-Chr10:33120983 Cre08g0879 Cre-Chr8:21917162 1.40E-58 dispersed
Cre10g1853 Cre-Chr10:33120983 Cre07g1782 Cre-Chr7:33278222 3.20E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64483 PF00069 Pkinase 6.60E-34 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1853 - - - 0.0