Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1853 ATGCTCCAACAGCGTCTGCTTACGTATTTTAGTGTCGTTGTCTATTCGACGATTCTGACTTCGCGGGTTTGGGCATTCACTAATCCGCCGGATGTTATAGCTCTTCAGGGTCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCCTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAGCCTCATCGATTTGAAGCAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTCAGCCAAAATCTTCCACATACTTTATCTTACATGGGACGTCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTAATTGACTTGATTGGGGGCAATAGATTTCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGCACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGGGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCGGGTGGAATTGTTCTCCTGGTTGGAGGGTTAACACTAGTAGTTAGCTTTGCAGCTCTCTTTTTCGTATTTTCCATGAAGAAAGTGCATGACAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCGTCTACTGCAACAGACGAGAGCTCACAAAGCTTTCCCCTGAGTTCACTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTGACAGAGCTTCAATCCACTACAAACAAGTTTAGTCAAGAGAATCTTTTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAATATCAACATGGGAGAGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATTGTTACACTGCTTGGATATTGTCTAGAGCATGGACAACATATACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCCAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGACGCCTCATATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACCAATAGAGTTAAAACGAAGGCTTCTGAGATAGTCAGTGGTGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAACCGAGGAAGGAGCAATTGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCACGCTTTGTCGATATTATCTCCCTTTGTATACAGTCTGTGAAAGAATTTCGACCGCCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAACGTGCTATAGCGGATGGAACTGAAGTGGATCCTTTTGAGAAATCCTTTCGTTCTACCAATACTGGCTTTCTCCGTGCGTTACTGTATTCCAGTGTCCTTGTCTTCTTGGCAATTCTGACTTCAGTCGTTCAGTGCTTTACTGACCCTTTCGATGTTATAGCTCTTCTCAATCTGTATAGTACCCTAAATTACCCACCTGAGCTTAAAGGATGGAGAACAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTGTTTTGTGTTGGTTCTTCTGTAATAAACCTTAAACTTAATAGACTAAACCTATCCGGGAATCTTGGAGACCAGCTTTATCTTCTCCATAATTTGAAGCAACTGGATGCTAGTTCCAATTCAATTCTGGGTGAATTTCCTTCTGGCTTACCCCCAAATGTCACTTCTGTGAATCTAAGCCATAATGTCCTATCTGGCCCCATCGGGAATGCTTTTTCTGGCTTACAAAATCTTGTGGAGATGGATCTGTCATATAACGATTTCACTGGAGATTTACCAAGTTCATTTGCTTCCTTGACTAATATCAATAGACTGTTCTTGCAGAAAAACAAATTCACAGGATCGGTTTCCTACTTATCTGACCTTCCATTGACTGATTTGAACATCCAAGACAATTACTTTAGTGGCACTATTCCAGAGCATTTCAAGACAGTTCCAAATTTATGGATTGGGGGAAATAGGTTCGATGTAAGTAATTCTCCACCCTGGGATTTTTCTGTGGAAACAACACCTTTGACGCGAAACAATAGTAGCTTTCCATTAACAGAACCGATTATCATTGAGAAATGTCCCTACAAGAAAAAGGGGGGGAAAGGGGGGGAAAGATTGGGCCCTGCTGGAATAGCTATAGTGGCTGGTGGAGGTGGTTTTGTAATAATCTTTGCAGCTCTCTTTGTTGCAATCTGCAACACACAAATATGTGCAAAGCAAAGGAGCATGAAGCATGTCAACGTGTCTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACCGCACCAGTTGGCAGCCCCCATATCTTGCCTCTCAGTTCTCCAGACATAGGTGGCGGTCTGAATCATGCATGTCCTACTCGTCATGCTAGAACTGAGAGGGGATGTAGCAGAAGTTTCTCTAAGAGATCCTGGTTCCCAGAAAAAACAAAAACTTACACTGTCACAGAGCTCGAATCCGCTACTAACAAGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCCGATGGCCAAATTTTGGCTGTGAAGAGGGTTGATATGGCGGCACTCTCTTTCACACAAGAACAACAGTTTCTGGATGTGGTCTGCACTGTATCCCGTTTGAGGCACCCTAACATTGTTAGCCTTCTTGGATACAGTGTAGAGAATGGACAACATTTACTAGCCTATGAGTACGTCAGGAATCTGTCTCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCGTCGAGTGTTCGAATCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCCCCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCATGCTTGATGAAGAATTCATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGCTGCTCAAATTGCTTTTGCTGACACTGGCTACTTTGCACCTGAATATGGCCAATCTGGGATTGATCATACCAAAAGTGATGTGTATGCATTCGGAGTGTTGTTTCTGGAGCTTATTACCGCAAAGAAACCAAACGATTTGAGACCAGGGATCGAGCAATCTCTGTCAAGATGGGCGTCATTTCAGCTTCACGACTGTGGGAATCTAGATGAGATTATTGATCCTGAGATTAAAGGAACATTATCCTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCTGTAATGGAACGTCGGCCACCCATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAAAGAAGGTTTGAGGTGGAAAAACGTGCTGCAGCGGAAGGTAAAGTAGTTGACACTTTCGAGAAATCCTTCCATACAACTAACACAGGGATTGTAAGACATCCTAACAAGACTGTCATTGGCATCAATGCTATCAATCGTCGCTTCTGGGTTCGTGCTATGATGGAGGACGCATCAAAGAACGGCGTCCTGGCCGTCCAAACGCTAAGGAACAACATAATGGCGTCTACTCTTCTGGCATCGACGGCGATAATGCTCTGTTCTCTAATCGCCGTCTTAATGACAAGCGGCGGCCACAGCGAATCTCCATTAGTCGTACTCGGCGACAGAAGCCAGTTCAGTTTCTCCATCAAATTTTTCGCCATTTTGCTTTGCTTTCTCGTAGCATTTTTGTTCAATGTTCAATCCATTAGGTATTATAGCCATGCCAGCATTCTGATCAACACGCCTTTCAAGAAAATTGCAATCGACGATCATAATCAACGGCTCACGGCGGAATACGTGGCGGCGACGGTGAACAGAGGCAGCTATTTCTGGTCGTTGGGATTGCGAGCTTTCTACTTCTCGTTTCCTCTGTTTTTGTGGATTTTTGGACCTATTCCTATGTTTTCTTCTTCATTTCTGCTTGTTTTTATGCTTTATTTCCTTGATGCTACTTTTGAATTCTGCTGGACGGATGGGAATTTGGATTACCTTCCTCAAAGAGACGAAGAAGAGGAAATTGGGAAATAG 4803 43.74 MLQQRLLTYFSVVVYSTILTSRVWAFTNPPDVIALQGLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSSLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHFSQNLPHTLSYMGRLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLIGGNRFRPEVNSPPWDFPLEKAPMVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGIVLLVGGLTLVVSFAALFFVFSMKKVHDKKINLKIGNMLPRSLPLGKAEDGSSTATDESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLTELQSTTNKFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHPNIVTLLGYCLEHGQHILGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELTPHICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQLLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQSVKEFRPPMSEIVEHLTNLQRKMEMVKRAIADGTEVDPFEKSFRSTNTGFLRALLYSSVLVFLAILTSVVQCFTDPFDVIALLNLYSTLNYPPELKGWRTDGGDPCDGTWTGVFCVGSSVINLKLNRLNLSGNLGDQLYLLHNLKQLDASSNSILGEFPSGLPPNVTSVNLSHNVLSGPIGNAFSGLQNLVEMDLSYNDFTGDLPSSFASLTNINRLFLQKNKFTGSVSYLSDLPLTDLNIQDNYFSGTIPEHFKTVPNLWIGGNRFDVSNSPPWDFSVETTPLTRNNSSFPLTEPIIIEKCPYKKKGGKGGERLGPAGIAIVAGGGGFVIIFAALFVAICNTQICAKQRSMKHVNVSLPVSKAEDGYSTAPVGSPHILPLSSPDIGGGLNHACPTRHARTERGCSRSFSKRSWFPEKTKTYTVTELESATNKYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMAALSFTQEQQFLDVVCTVSRLRHPNIVSLLGYSVENGQHLLAYEYVRNLSLDDALHSVAHNPLSSSVRIQIAHGVAKALDYLHNAFFPPFAHCNLKAANIMLDEEFMPKICDCGLSVLKPLAAQIAFADTGYFAPEYGQSGIDHTKSDVYAFGVLFLELITAKKPNDLRPGIEQSLSRWASFQLHDCGNLDEIIDPEIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRRFEVEKRAAAEGKVVDTFEKSFHTTNTGIVRHPNKTVIGINAINRRFWVRAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSGGHSESPLVVLGDRSQFSFSIKFFAILLCFLVAFLFNVQSIRYYSHASILINTPFKKIAIDDHNQRLTAEYVAATVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFSSSFLLVFMLYFLDATFEFCWTDGNLDYLPQRDEEEEIGK 1600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33120983 33135742 - CrPI670011_10g018530.1 Cre10g1853 511155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1853 1600 Gene3D Ribonuclease Inhibitor 728 952 IPR032675 -
Cre10g1853 1600 Gene3D Ribonuclease Inhibitor 28 236 IPR032675 -
Cre10g1853 1600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 819 930 - -
Cre10g1853 1600 MobiDBLite consensus disorder prediction 327 341 - -
Cre10g1853 1600 FunFam Leucine-rich repeat receptor-like protein kinase 471 680 - -
Cre10g1853 1600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1165 1368 - -
Cre10g1853 1600 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 358 470 - -
Cre10g1853 1600 Gene3D Transferase(Phosphotransferase) domain 1 471 690 - -
Cre10g1853 1600 Gene3D Transferase(Phosphotransferase) domain 1 1165 1380 - -
Cre10g1853 1600 Pfam Protein of unknown function, DUF599 1387 1577 IPR006747 -
Cre10g1853 1600 Pfam Protein kinase domain 394 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 Pfam Protein kinase domain 1087 1348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 SUPERFAMILY Protein kinase-like (PK-like) 1062 1353 IPR011009 -
Cre10g1853 1600 Gene3D Phosphorylase Kinase; domain 1 356 470 - -
Cre10g1853 1600 Gene3D Phosphorylase Kinase; domain 1 1049 1164 - -
Cre10g1853 1600 SMART LRR_typ_2 140 163 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 840 863 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 94 118 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 164 187 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 794 822 IPR003591 -
Cre10g1853 1600 SMART LRR_typ_2 188 211 IPR003591 -
Cre10g1853 1600 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cre10g1853 1600 Pfam Leucine rich repeat N-terminal domain 731 768 IPR013210 -
Cre10g1853 1600 SUPERFAMILY L domain-like 725 914 - -
Cre10g1853 1600 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Cre10g1853 1600 Pfam Leucine rich repeat 817 877 IPR001611 GO:0005515(InterPro)
Cre10g1853 1600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 228 - -
Cre10g1853 1600 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 1052 1164 - -
Cre10g1853 1600 Pfam Leucine Rich Repeat 97 115 IPR001611 GO:0005515(InterPro)
Cre10g1853 1600 ProSiteProfiles Protein kinase domain profile. 393 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 SUPERFAMILY L domain-like 27 206 - -
Cre10g1853 1600 SUPERFAMILY Protein kinase-like (PK-like) 370 670 IPR011009 -
Cre10g1853 1600 ProSiteProfiles Protein kinase domain profile. 1087 1361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1853 1600 MobiDBLite consensus disorder prediction 319 341 - -
Cre10g1853 1600 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 673 IPR046959 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1853 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1421 Cre-Chr1:27450068 Cre10g1853 Cre-Chr10:33120983 1.80E-44 dispersed
Cre06g2319 Cre-Chr6:31141849 Cre10g1853 Cre-Chr10:33120983 1.10E-51 dispersed
Cre09g0136 Cre-Chr9:1624505 Cre10g1853 Cre-Chr10:33120983 3.30E-87 dispersed
Cre10g1853 Cre-Chr10:33120983 Cre08g0879 Cre-Chr8:21917162 1.40E-58 dispersed
Cre10g1853 Cre-Chr10:33120983 Cre07g1782 Cre-Chr7:33278222 3.20E-98 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre01g0871 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.6e-85 312.4
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre07g1782 . 159 853 Strubbelig Receptor Gene Family AT1G53730 60.5 5.9e-201 698.0
Cre09g0136 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.9e-186 647.9
Cre01g0871 . 9 689 Strubbelig Receptor Gene Family AT1G53730 50.7 1.8e-146 516.9
Cre07g1782 . 159 848 Strubbelig Receptor Gene Family AT3G14350 57.0 2.1e-179 626.3
Cre09g0136 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.4e-167 587.0
Cre01g0871 . 138 711 Strubbelig Receptor Gene Family AT4G22130 62.8 1.9e-178 622.9
Cre07g1782 . 532 860 Strubbelig Receptor Gene Family AT4G22130 63.7 5.2e-120 428.7
Cre09g0136 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 5.4e-117 418.7
Cre02g0464 . 483 788 Strubbelig Receptor Gene Family AT4G22130 59.9 3.8e-107 386.0
Cre04g1889 . 442 730 Strubbelig Receptor Gene Family AT4G22130 59.8 5.0e-99 359.0
Cre08g0455 . 359 706 Strubbelig Receptor Gene Family AT4G22130 51.8 6.6e-99 358.6
Cre10g1853 . 365 687 Strubbelig Receptor Gene Family AT4G22130 52.6 1.9e-93 340.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64483 PF00069 Pkinase 6.60E-34 CL0016 Cre PK