Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1870 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAGAATGGAAATATAACTGAAGATATCCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAGCCAACAATTGCAGCTATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCATAATGCAAGTATTGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCATGGAGTTTGGCGTATTAAAGGCATTATTCAGGTTTCCAGATCGATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTTGATCCATCCTTTCCACGATTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACTGCGGAACCATCATTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTATGGGAGCATCTAACGAATCAACAAGCTGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTTGTTAAAACAGCGCTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATATGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTTTTTCATGATGATATCACAGTTGTTGTCATCTTTCTGGACTATGAGTTGCAAGGGAAGAAGGCACGTGTGCCAGAATTATCTGTTCGTGGGTTTACTGATACCGTTGGACCGTCAAATTTCAATGTCCTTCGAGGCATTGATGAGAATGGAAGGTCTGTTGGGTGA 1173 43.56 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEDILRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDYELQGKKARVPELSVRGFTDTVGPSNFNVLRGIDENGRSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33280439 33283292 + CrPI670011_10g018700.1 Cre10g1870 511172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1870 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Cre10g1870 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre10g1870 390 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Cre10g1870 390 Gene3D - 27 358 IPR036457 -
Cre10g1870 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Cre10g1870 390 SMART PP2C_4 43 346 IPR001932 -
Cre10g1870 390 Pfam Protein phosphatase 2C 69 317 IPR001932 -
Cre10g1870 390 CDD PP2Cc 47 348 IPR001932 -
Cre10g1870 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1020 Cre-Chr2:7854427 Cre10g1870 Cre-Chr10:33280439 2.80E-117 dispersed
Cre10g1870 Cre-Chr10:33280439 Cre10g2183 Cre-Chr10:36367698 7.00E-116 dispersed
Cre10g1870 Cre-Chr10:33280439 Cre02g1523 Cre-Chr2:27503923 5.20E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1870 K01102 - csv:101222146 763.837