Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1871 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCCAAAGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTGTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.91 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33285010 33287388 - CrPI670011_10g018710.1 Cre10g1871 511173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1871 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cre10g1871 377 FunFam Major actin 260 340 - -
Cre10g1871 377 Gene3D - 10 371 - -
Cre10g1871 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cre10g1871 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cre10g1871 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cre10g1871 377 PRINTS Actin signature 51 62 IPR004000 -
Cre10g1871 377 PRINTS Actin signature 238 254 IPR004000 -
Cre10g1871 377 PRINTS Actin signature 63 85 IPR004000 -
Cre10g1871 377 PRINTS Actin signature 142 161 IPR004000 -
Cre10g1871 377 PRINTS Actin signature 28 37 IPR004000 -
Cre10g1871 377 PRINTS Actin signature 117 130 IPR004000 -
Cre10g1871 377 FunFam Putative actin-related protein 5 341 369 - -
Cre10g1871 377 FunFam Actin, muscle 182 273 - -
Cre10g1871 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cre10g1871 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cre10g1871 377 Gene3D - 140 340 - -
Cre10g1871 377 SMART actin_3 7 377 IPR004000 -
Cre10g1871 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cre10g1871 377 Pfam Actin 5 377 IPR004000 -
Cre10g1871 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cre10g1871 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1871 K10355 - - csv:101221679 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0489 Cre-Chr1:4215697 Cre10g1871 Cre-Chr10:33285010 2.00E-216 dispersed
Cre02g0410 Cre-Chr2:1265488 Cre10g1871 Cre-Chr10:33285010 2.20E-215 dispersed
Cre02g2324 Cre-Chr2:36726534 Cre10g1871 Cre-Chr10:33285010 2.10E-190 dispersed
Cre04g1194 Cre-Chr4:30598851 Cre10g1871 Cre-Chr10:33285010 2.20E-215 dispersed
Cre05g2778 Cre-Chr5:38548975 Cre10g1871 Cre-Chr10:33285010 6.60E-59 dispersed
Cre07g0679 Cre-Chr7:4586163 Cre10g1871 Cre-Chr10:33285010 6.10E-207 dispersed
Cre09g1478 Cre-Chr9:29159134 Cre10g1871 Cre-Chr10:33285010 1.10E-211 dispersed
Cre10g1871 Cre-Chr10:33285010 Cre11g1203 Cre-Chr11:9950927 1.50E-94 dispersed
Cre10g1871 Cre-Chr10:33285010 Cre04g0915 Cre-Chr4:27828040 1.00E-217 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.3e-215 743.0
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.3e-215 743.0
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.7e-213 738.0
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.7e-213 738.0
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-212 735.7
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.3e-212 734.9
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT2G37620 96.1 3.3e-203 704.5
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-186 649.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.4e-214 741.5
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.0e-214 740.0
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.8e-213 736.5
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 9.5e-211 729.6
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.6e-210 727.6
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.6e-210 727.6
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT5G59370 96.7 2.5e-203 704.9
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT5G59370 97.0 1.6e-186 649.0
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.1e-214 742.7
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.2e-214 741.1
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.5e-213 737.6
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 4.3e-211 730.7
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G46520 96.9 1.1e-203 706.1
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 4.8e-186 647.5
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.7e-215 744.2
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.1e-214 740.7
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.4
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.0e-212 736.1
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.0e-212 736.1
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.0e-212 734.6
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G12110 97.2 7.8e-205 709.9
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G12110 96.4 5.6e-187 650.6
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 3.1e-209 724.5
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.2e-209 723.8
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.2e-209 723.8
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.0e-208 721.8
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.0e-208 721.8
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.3e-207 719.2
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-199 690.6
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G18780 92.5 4.2e-182 634.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.1e-209 726.1
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.8e-209 725.3
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.8e-209 725.3
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.8e-209 723.4
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.4e-208 720.7
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.4e-208 720.7
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-199 690.6
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT1G49240 92.5 4.2e-182 634.4
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.9e-217 749.6
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.9e-217 749.6
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-214 741.1
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.0e-214 740.0
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.9e-212 734.2
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT5G09810 96.1 5.6e-203 703.7
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 1.1e-185 646.4
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 3.8e-58 221.1
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.5e-57 216.5
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT2G19760 72.5 4.0e-55 211.1
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 2.0e-54 208.8
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT2G19760 73.3 3.4e-54 208.0
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.0e-58 220.7
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.6e-56 215.7
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT4G29350 73.3 1.5e-54 209.1
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.2e-53 205.3
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT4G29350 71.0 7.0e-52 200.3
Cre11g0696 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 6.2e-38 153.7
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT4G29340 73.9 3.3e-57 218.0
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT4G29340 73.1 1.2e-54 209.5
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 3.4e-54 208.0
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276