Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1877 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCGTCGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA 1284 43.54 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33346884 33348167 + CrPI670011_10g018770.1 Cre10g1877 511179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1877 427 SUPERFAMILY RING/U-box 137 194 - -
Cre10g1877 427 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cre10g1877 427 MobiDBLite consensus disorder prediction 396 427 - -
Cre10g1877 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 365 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cre10g1877 427 MobiDBLite consensus disorder prediction 251 271 - -
Cre10g1877 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Cre10g1877 427 CDD RING-HC_AtRMA-like 139 182 - -
Cre10g1877 427 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Cre10g1877 427 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cre10g1877 427 MobiDBLite consensus disorder prediction 350 369 - -
Cre10g1877 427 SMART ring_2 141 181 IPR001841 -
Cre10g1877 427 FunFam Zinc finger family protein 122 195 - -
Cre10g1877 427 MobiDBLite consensus disorder prediction 251 265 - -
Cre10g1877 427 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1430 Cre-Chr5:17509140 Cre10g1877 Cre-Chr10:33346884 2.70E-07 dispersed
Cre08g1481 Cre-Chr8:27641267 Cre10g1877 Cre-Chr10:33346884 1.80E-26 dispersed
Cre10g1877 Cre-Chr10:33346884 Cre11g2213 Cre-Chr11:33853476 4.90E-22 dispersed
Cre10g1418 Cre-Chr10:27896626 Cre10g1877 Cre-Chr10:33346884 1.00E-33 transposed
Cre10g1877 Cre-Chr10:33346884 Cre04g1912 Cre-Chr4:36699705 2.20E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1877 K10666 - csv:101220497 789.26