Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1878 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCTCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGAAGATGAAGATGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCCTCGTGCGAGCGTGTCGCCGCCACCACCACCACTCCCACCGCCTCCGTTCCCACCAAAACCGCCACCCCCGCCCCGTCATCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCATTTGCATCAGGCTGCTTCATGA 1056 46.5 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASLQDDEEEDEDDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGIKRKRSWEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAATTTTPTASVPTKTATPAPSSALCLANKPKILPFPHLHQAAS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33370003 33372027 + CrPI670011_10g018780.1 Cre10g1878 511180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1878 351 CDD homeodomain 196 252 IPR001356 GO:0003677(InterPro)
Cre10g1878 351 CDD bZIP 244 283 - -
Cre10g1878 351 FunFam Homeobox-leucine zipper protein HAT22 199 245 - -
Cre10g1878 351 MobiDBLite consensus disorder prediction 176 192 - -
Cre10g1878 351 SUPERFAMILY Homeodomain-like 188 252 IPR009057 -
Cre10g1878 351 SMART HOX_1 193 255 IPR001356 GO:0003677(InterPro)
Cre10g1878 351 Pfam Homeobox associated leucine zipper 251 285 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g1878 351 Pfam Homeodomain 197 249 IPR001356 GO:0003677(InterPro)
Cre10g1878 351 Gene3D - 199 249 - -
Cre10g1878 351 MobiDBLite consensus disorder prediction 9 32 - -
Cre10g1878 351 Coils Coil 257 287 - -
Cre10g1878 351 SMART halz 251 294 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g1878 351 MobiDBLite consensus disorder prediction 61 75 - -
Cre10g1878 351 MobiDBLite consensus disorder prediction 1 32 - -
Cre10g1878 351 MobiDBLite consensus disorder prediction 176 198 - -
Cre10g1878 351 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre10g1878 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 67 322 IPR050762 -
Cre10g1878 351 MobiDBLite consensus disorder prediction 52 98 - -
Cre10g1878 351 ProSiteProfiles 'Homeobox' domain profile. 191 251 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0495 Cre-Chr10:4074247 Cre10g1878 Cre-Chr10:33370003 1.10E-49 dispersed
Cre10g0999 Cre-Chr10:17069352 Cre10g1878 Cre-Chr10:33370003 2.10E-50 dispersed
Cre10g1417 Cre-Chr10:27881835 Cre10g1878 Cre-Chr10:33370003 3.00E-44 dispersed
Cre10g1878 Cre-Chr10:33370003 Cre10g2062 Cre-Chr10:35320509 2.60E-13 dispersed
Cre10g1878 Cre-Chr10:33370003 Cre09g0360 Cre-Chr9:3557224 2.70E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54585 PF00046 Homeodomain 2.30E-15 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1878 K09338 - csv:101222778 455.292