Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1878 | ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCTCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGAAGATGAAGATGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCCTCGTGCGAGCGTGTCGCCGCCACCACCACCACTCCCACCGCCTCCGTTCCCACCAAAACCGCCACCCCCGCCCCGTCATCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCATTTGCATCAGGCTGCTTCATGA | 1056 | 46.5 | MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASLQDDEEEDEDDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGIKRKRSWEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAATTTTPTASVPTKTATPAPSSALCLANKPKILPFPHLHQAAS | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33370003 | 33372027 | + | CrPI670011_10g018780.1 | Cre10g1878 | 511180 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1878 | 351 | CDD | homeodomain | 196 | 252 | IPR001356 | GO:0003677(InterPro) | |
Cre10g1878 | 351 | CDD | bZIP | 244 | 283 | - | - | |
Cre10g1878 | 351 | FunFam | Homeobox-leucine zipper protein HAT22 | 199 | 245 | - | - | |
Cre10g1878 | 351 | MobiDBLite | consensus disorder prediction | 176 | 192 | - | - | |
Cre10g1878 | 351 | SUPERFAMILY | Homeodomain-like | 188 | 252 | IPR009057 | - | |
Cre10g1878 | 351 | SMART | HOX_1 | 193 | 255 | IPR001356 | GO:0003677(InterPro) | |
Cre10g1878 | 351 | Pfam | Homeobox associated leucine zipper | 251 | 285 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre10g1878 | 351 | Pfam | Homeodomain | 197 | 249 | IPR001356 | GO:0003677(InterPro) | |
Cre10g1878 | 351 | Gene3D | - | 199 | 249 | - | - | |
Cre10g1878 | 351 | MobiDBLite | consensus disorder prediction | 9 | 32 | - | - | |
Cre10g1878 | 351 | Coils | Coil | 257 | 287 | - | - | |
Cre10g1878 | 351 | SMART | halz | 251 | 294 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre10g1878 | 351 | MobiDBLite | consensus disorder prediction | 61 | 75 | - | - | |
Cre10g1878 | 351 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cre10g1878 | 351 | MobiDBLite | consensus disorder prediction | 176 | 198 | - | - | |
Cre10g1878 | 351 | ProSitePatterns | 'Homeobox' domain signature. | 226 | 249 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre10g1878 | 351 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 67 | 322 | IPR050762 | - | |
Cre10g1878 | 351 | MobiDBLite | consensus disorder prediction | 52 | 98 | - | - | |
Cre10g1878 | 351 | ProSiteProfiles | 'Homeobox' domain profile. | 191 | 251 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g0495 | Cre-Chr10:4074247 | Cre10g1878 | Cre-Chr10:33370003 | 1.10E-49 | dispersed | |
Cre10g0999 | Cre-Chr10:17069352 | Cre10g1878 | Cre-Chr10:33370003 | 2.10E-50 | dispersed | |
Cre10g1417 | Cre-Chr10:27881835 | Cre10g1878 | Cre-Chr10:33370003 | 3.00E-44 | dispersed | |
Cre10g1878 | Cre-Chr10:33370003 | Cre10g2062 | Cre-Chr10:35320509 | 2.60E-13 | dispersed | |
Cre10g1878 | Cre-Chr10:33370003 | Cre09g0360 | Cre-Chr9:3557224 | 2.70E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54585 | PF00046 | Homeodomain | 2.30E-15 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1878 | K09338 | - | csv:101222778 | 455.292 |