Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g1934 | ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGAAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA | 498 | 55.02 | MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33995185 | 33995682 | - | CrPI670011_10g019340.1 | Cre10g1934 | 511236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g1934 | 165 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Cre10g1934 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 12 | 159 | IPR045899 | - | |
| Cre10g1934 | 165 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - | |
| Cre10g1934 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 147 | IPR013083 | - | |
| Cre10g1934 | 165 | CDD | RING-H2_PA-TM-RING | 100 | 142 | - | - | |
| Cre10g1934 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Cre10g1934 | 165 | SUPERFAMILY | RING/U-box | 74 | 147 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g0761 | Cre-Chr8:20653497 | Cre10g1934 | Cre-Chr10:33995185 | 8.70E-15 | dispersed | |
| Cre08g1007 | Cre-Chr8:23173289 | Cre10g1934 | Cre-Chr10:33995185 | 2.60E-25 | dispersed | |
| Cre10g1778 | Cre-Chr10:32197245 | Cre10g1934 | Cre-Chr10:33995185 | 1.60E-07 | dispersed | |
| Cre10g1934 | Cre-Chr10:33995185 | Cre11g1155 | Cre-Chr11:9197410 | 4.60E-08 | dispersed | |
| Cre10g1934 | Cre-Chr10:33995185 | Cre04g1144 | Cre-Chr4:30044273 | 4.20E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g1934 | - | - | - | 0.0 |