Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1939 | ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTTCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACCGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTCCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTCGAGAAGCAGTTCGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCTCTGAAAACTGCTGAAAATCTTGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACGGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGGATTAAGTTTGTTAAATCGACCTGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG | 2022 | 45.45 | MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMDRSEISSILEITLLLRRDRNPAGEHRRPANPLQIRGHLSNQFEPISSKFKSKRIFRALLSLSSTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLYIGINGCSLKTAENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI | 673 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34055389 | 34062601 | - | CrPI670011_10g019390.1 | Cre10g1939 | 511241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1939 | 673 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020(InterPro) | |
Cre10g1939 | 673 | Pfam | SNARE domain | 238 | 286 | IPR000727 | - | |
Cre10g1939 | 673 | ProSitePatterns | TatD deoxyribonuclease family signature 2. | 498 | 508 | IPR018228 | - | |
Cre10g1939 | 673 | FunFam | Syntaxin 132 | 194 | 287 | - | - | |
Cre10g1939 | 673 | PANTHER | TATD FAMILY DEOXYRIBONUCLEASE | 344 | 661 | IPR050891 | GO:0005829(PANTHER)|GO:0008296(PANTHER) | |
Cre10g1939 | 673 | Gene3D | - | 198 | 287 | - | - | |
Cre10g1939 | 673 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Cre10g1939 | 673 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020(InterPro) | |
Cre10g1939 | 673 | Coils | Coil | 204 | 224 | - | - | |
Cre10g1939 | 673 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cre10g1939 | 673 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Cre10g1939 | 673 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 28 | 158 | - | - | |
Cre10g1939 | 673 | Coils | Coil | 31 | 65 | - | - | |
Cre10g1939 | 673 | ProSitePatterns | TatD deoxyribonuclease family signature 3. | 562 | 578 | IPR018228 | - | |
Cre10g1939 | 673 | SUPERFAMILY | Metallo-dependent hydrolases | 356 | 651 | IPR032466 | - | |
Cre10g1939 | 673 | FunFam | Putative tatD related deoxyribonuclease | 351 | 657 | - | - | |
Cre10g1939 | 673 | Pfam | TatD related DNase | 377 | 650 | IPR001130 | GO:0016788(InterPro) | |
Cre10g1939 | 673 | CDD | TatD_DNAse | 356 | 651 | IPR001130 | GO:0016788(InterPro) | |
Cre10g1939 | 673 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cre10g1939 | 673 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Cre10g1939 | 673 | Gene3D | - | 29 | 161 | - | - | |
Cre10g1939 | 673 | Coils | Coil | 126 | 150 | - | - | |
Cre10g1939 | 673 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020(InterPro) | |
Cre10g1939 | 673 | Gene3D | - | 345 | 657 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0696 | Cre-Chr4:24920787 | Cre10g1939 | Cre-Chr10:34055389 | 7.40E-60 | dispersed | |
Cre10g1499 | Cre-Chr10:28862408 | Cre10g1939 | Cre-Chr10:34055389 | 4.90E-64 | dispersed | |
Cre03g0844 | Cre-Chr3:7188615 | Cre10g1939 | Cre-Chr10:34055389 | 6.00E-91 | transposed | |
Cre04g1576 | Cre-Chr4:34311166 | Cre10g1939 | Cre-Chr10:34055389 | 1.40E-47 | transposed | |
Cre10g1939 | Cre-Chr10:34055389 | Cre04g1143 | Cre-Chr4:30039475 | 8.10E-112 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1939 | K03424 | - | csv:101209174 | 641.728 |