Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1939 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTTCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACCGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTCCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTCGAGAAGCAGTTCGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCTCTGAAAACTGCTGAAAATCTTGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACGGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGGATTAAGTTTGTTAAATCGACCTGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 2022 45.45 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMDRSEISSILEITLLLRRDRNPAGEHRRPANPLQIRGHLSNQFEPISSKFKSKRIFRALLSLSSTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLYIGINGCSLKTAENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34055389 34062601 - CrPI670011_10g019390.1 Cre10g1939 511241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1939 673 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Cre10g1939 673 Pfam SNARE domain 238 286 IPR000727 -
Cre10g1939 673 ProSitePatterns TatD deoxyribonuclease family signature 2. 498 508 IPR018228 -
Cre10g1939 673 FunFam Syntaxin 132 194 287 - -
Cre10g1939 673 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 344 661 IPR050891 GO:0005829(PANTHER)|GO:0008296(PANTHER)
Cre10g1939 673 Gene3D - 198 287 - -
Cre10g1939 673 SMART tSNARE_6 196 263 IPR000727 -
Cre10g1939 673 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Cre10g1939 673 Coils Coil 204 224 - -
Cre10g1939 673 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre10g1939 673 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cre10g1939 673 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Cre10g1939 673 Coils Coil 31 65 - -
Cre10g1939 673 ProSitePatterns TatD deoxyribonuclease family signature 3. 562 578 IPR018228 -
Cre10g1939 673 SUPERFAMILY Metallo-dependent hydrolases 356 651 IPR032466 -
Cre10g1939 673 FunFam Putative tatD related deoxyribonuclease 351 657 - -
Cre10g1939 673 Pfam TatD related DNase 377 650 IPR001130 GO:0016788(InterPro)
Cre10g1939 673 CDD TatD_DNAse 356 651 IPR001130 GO:0016788(InterPro)
Cre10g1939 673 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre10g1939 673 CDD SNARE_syntaxin1-like 200 262 - -
Cre10g1939 673 Gene3D - 29 161 - -
Cre10g1939 673 Coils Coil 126 150 - -
Cre10g1939 673 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Cre10g1939 673 Gene3D - 345 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0696 Cre-Chr4:24920787 Cre10g1939 Cre-Chr10:34055389 7.40E-60 dispersed
Cre10g1499 Cre-Chr10:28862408 Cre10g1939 Cre-Chr10:34055389 4.90E-64 dispersed
Cre03g0844 Cre-Chr3:7188615 Cre10g1939 Cre-Chr10:34055389 6.00E-91 transposed
Cre04g1576 Cre-Chr4:34311166 Cre10g1939 Cre-Chr10:34055389 1.40E-47 transposed
Cre10g1939 Cre-Chr10:34055389 Cre04g1143 Cre-Chr4:30039475 8.10E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1939 K03424 - csv:101209174 641.728