Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1945 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGACGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGCGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCGATGGATTTACTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.75 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFARIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLLCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34150534 34151751 - CrPI670011_10g019450.1 Cre10g1945 511247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1945 405 Gene3D - 96 390 IPR011989 -
Cre10g1945 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre10g1945 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre10g1945 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Cre10g1945 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cre10g1945 405 SUPERFAMILY RING/U-box 4 85 - -
Cre10g1945 405 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630(InterPro)
Cre10g1945 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre10g1945 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Cre10g1945 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1532 Cre-Chr3:30339264 Cre10g1945 Cre-Chr10:34150534 8.20E-75 dispersed
Cre05g0351 Cre-Chr5:3200009 Cre10g1945 Cre-Chr10:34150534 5.20E-53 dispersed
Cre06g0844 Cre-Chr6:1754009 Cre10g1945 Cre-Chr10:34150534 6.70E-38 dispersed
Cre10g1945 Cre-Chr10:34150534 Cre11g1810 Cre-Chr11:29702577 2.80E-11 dispersed
Cre04g0706 Cre-Chr4:25036341 Cre10g1945 Cre-Chr10:34150534 1.30E-115 transposed
Cre05g1190 Cre-Chr5:11516977 Cre10g1945 Cre-Chr10:34150534 1.20E-49 transposed
Cre05g1302 Cre-Chr5:13671046 Cre10g1945 Cre-Chr10:34150534 1.00E-46 transposed
Cre07g0572 Cre-Chr7:3489766 Cre10g1945 Cre-Chr10:34150534 4.30E-06 transposed
Cre07g0933 Cre-Chr7:9062299 Cre10g1945 Cre-Chr10:34150534 3.00E-46 transposed
Cre10g1945 Cre-Chr10:34150534 Cre02g2552 Cre-Chr2:38751617 1.80E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1945 - - - 0.0