Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1946 ATGGCGACTTACCTTCATGGAAATTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTCTCCGACACGCCGCCGCCGCCGCCTCTGTCCCACCCTAATCTCGTCTTCTTCAATTCTCCTTCTACGGCTGCTAATTCCTATACTACACTCACACAAGCGCCCCCGTCTTCTCACACTCAACAATTCGTTGGAATTCCGTTGCAGACGACTGCCGCTTCCCCGACGTCACAAGACCATAATTCGCATCCTTTGAATCCCCACCATGATATCTCTGCCTTGCACGGCTTTGCTCCACGCCTTCACCATAACATTTGGAACCAAATTGACCCATCCACGGCCGCGCGTGAGTCTGCACGTGCTCAGCAGGGCTTGTCCTTGAGCCTTTCTTCGCAGCACCAGCAAGGTTTTGGGTCGAGAGATGTTCAATCTCAGACCCAACAGGCGGCGTCTGGCGAGGAGAACATGCGGATCTCCGGTGGATCGAGTTCTTCGGCTTCTGGTGTCACTAACGGCGTTGCTGGAATTCAGGGCGTTTTAATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGAATTAAAACTGAATCATCTCCAAAGAAGGCCACCGGAAATCAATCGAAGATGATCGGAGATGCTCCCGCTGCCACCGGAACTGCAGACGGTTCTTTAGAAGGAGAAACCGATGGTAAACGGGCCGCCGAGCTTACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGACGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGTTCGGCGAGAACCTACACCGCCCTTGCACTTCAGACGATTTCGAAGCAATTCCGTTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGGGGCTTACCGGAGAGATCGGTATCGATTCTTCGGGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCAGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAAGAACAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCAGAGACAAAAAGCCCCAATTCAAAACAAGAGGAAAAAAGCCCAAATCCAAACCAAAACGTGCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAGCCTCATCGGAGCTCGACGGAATCACACAAGGAAGCCCTAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAACAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAACATCAAAATCACAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATTCGACGACGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGGCCAATACCCAATCGGCGAAATCGCCAGATTCGACGCCGATCAGTTTACTCCAAGATTCTCCGGCAACAATGGTGTCTCTTTGACTTTAGGCCTTCCCCATTGTGAAAATCTCTCCTTAAACGCAGCTACCCACCAAAGCTTTCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTACTGCCAGACTTTGTGGCCTAA 2139 48.34 MATYLHGNSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPLSHPNLVFFNSPSTAANSYTTLTQAPPSSHTQQFVGIPLQTTAASPTSQDHNSHPLNPHHDISALHGFAPRLHHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKTESSPKKATGNQSKMIGDAPAATGTADGSLEGETDGKRAAELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQEEKSPNPNQNVHPSISISNSSGGNVRNPSGFTLIGASSELDGITQGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNHNPHHNHHLPMKFDDERQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34169119 34171544 - CrPI670011_10g019460.1 Cre10g1946 511248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1946 712 Coils Coil 263 283 - -
Cre10g1946 712 SUPERFAMILY Homeodomain-like 380 446 IPR009057 -
Cre10g1946 712 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre10g1946 712 SMART prehox3 185 331 IPR006563 -
Cre10g1946 712 MobiDBLite consensus disorder prediction 450 553 - -
Cre10g1946 712 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677(InterPro)
Cre10g1946 712 FunFam BEL1-like homeodomain protein 9 382 444 - -
Cre10g1946 712 MobiDBLite consensus disorder prediction 124 179 - -
Cre10g1946 712 CDD homeodomain 379 440 IPR001356 GO:0003677(InterPro)
Cre10g1946 712 Pfam Associated with HOX 191 330 IPR006563 -
Cre10g1946 712 MobiDBLite consensus disorder prediction 452 533 - -
Cre10g1946 712 MobiDBLite consensus disorder prediction 216 251 - -
Cre10g1946 712 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 143 480 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre10g1946 712 SMART HOX_1 379 443 IPR001356 GO:0003677(InterPro)
Cre10g1946 712 Gene3D - 374 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1946 Cre-Chr10:34169119 Cre10g2260 Cre-Chr10:36943790 3.50E-49 dispersed
Cre08g1638 Cre-Chr8:28886980 Cre10g1946 Cre-Chr10:34169119 1.40E-42 transposed
Cre09g0262 Cre-Chr9:2685876 Cre10g1946 Cre-Chr10:34169119 3.10E-71 transposed
Cre09g2275 Cre-Chr9:41969914 Cre10g1946 Cre-Chr10:34169119 1.40E-67 transposed
Cre11g0897 Cre-Chr11:6157965 Cre10g1946 Cre-Chr10:34169119 2.10E-83 transposed
Cre10g1946 Cre-Chr10:34169119 Cre02g2551 Cre-Chr2:38742831 1.10E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54592 PF07526 POX 9.60E-50 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1946 - - - 0.0