Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1946 | ATGGCGACTTACCTTCATGGAAATTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTCTCCGACACGCCGCCGCCGCCGCCTCTGTCCCACCCTAATCTCGTCTTCTTCAATTCTCCTTCTACGGCTGCTAATTCCTATACTACACTCACACAAGCGCCCCCGTCTTCTCACACTCAACAATTCGTTGGAATTCCGTTGCAGACGACTGCCGCTTCCCCGACGTCACAAGACCATAATTCGCATCCTTTGAATCCCCACCATGATATCTCTGCCTTGCACGGCTTTGCTCCACGCCTTCACCATAACATTTGGAACCAAATTGACCCATCCACGGCCGCGCGTGAGTCTGCACGTGCTCAGCAGGGCTTGTCCTTGAGCCTTTCTTCGCAGCACCAGCAAGGTTTTGGGTCGAGAGATGTTCAATCTCAGACCCAACAGGCGGCGTCTGGCGAGGAGAACATGCGGATCTCCGGTGGATCGAGTTCTTCGGCTTCTGGTGTCACTAACGGCGTTGCTGGAATTCAGGGCGTTTTAATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGAATTAAAACTGAATCATCTCCAAAGAAGGCCACCGGAAATCAATCGAAGATGATCGGAGATGCTCCCGCTGCCACCGGAACTGCAGACGGTTCTTTAGAAGGAGAAACCGATGGTAAACGGGCCGCCGAGCTTACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGACGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGTTCGGCGAGAACCTACACCGCCCTTGCACTTCAGACGATTTCGAAGCAATTCCGTTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGGGGCTTACCGGAGAGATCGGTATCGATTCTTCGGGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCAGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAAGAACAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCAGAGACAAAAAGCCCCAATTCAAAACAAGAGGAAAAAAGCCCAAATCCAAACCAAAACGTGCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAGCCTCATCGGAGCTCGACGGAATCACACAAGGAAGCCCTAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAACAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAACATCAAAATCACAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATTCGACGACGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGGCCAATACCCAATCGGCGAAATCGCCAGATTCGACGCCGATCAGTTTACTCCAAGATTCTCCGGCAACAATGGTGTCTCTTTGACTTTAGGCCTTCCCCATTGTGAAAATCTCTCCTTAAACGCAGCTACCCACCAAAGCTTTCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTACTGCCAGACTTTGTGGCCTAA | 2139 | 48.34 | MATYLHGNSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPLSHPNLVFFNSPSTAANSYTTLTQAPPSSHTQQFVGIPLQTTAASPTSQDHNSHPLNPHHDISALHGFAPRLHHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKTESSPKKATGNQSKMIGDAPAATGTADGSLEGETDGKRAAELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQEEKSPNPNQNVHPSISISNSSGGNVRNPSGFTLIGASSELDGITQGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNHNPHHNHHLPMKFDDERQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA | 712 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34169119 | 34171544 | - | CrPI670011_10g019460.1 | Cre10g1946 | 511248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1946 | 712 | Coils | Coil | 263 | 283 | - | - | |
Cre10g1946 | 712 | SUPERFAMILY | Homeodomain-like | 380 | 446 | IPR009057 | - | |
Cre10g1946 | 712 | Pfam | Homeobox KN domain | 396 | 435 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre10g1946 | 712 | SMART | prehox3 | 185 | 331 | IPR006563 | - | |
Cre10g1946 | 712 | MobiDBLite | consensus disorder prediction | 450 | 553 | - | - | |
Cre10g1946 | 712 | ProSiteProfiles | 'Homeobox' domain profile. | 376 | 439 | IPR001356 | GO:0003677(InterPro) | |
Cre10g1946 | 712 | FunFam | BEL1-like homeodomain protein 9 | 382 | 444 | - | - | |
Cre10g1946 | 712 | MobiDBLite | consensus disorder prediction | 124 | 179 | - | - | |
Cre10g1946 | 712 | CDD | homeodomain | 379 | 440 | IPR001356 | GO:0003677(InterPro) | |
Cre10g1946 | 712 | Pfam | Associated with HOX | 191 | 330 | IPR006563 | - | |
Cre10g1946 | 712 | MobiDBLite | consensus disorder prediction | 452 | 533 | - | - | |
Cre10g1946 | 712 | MobiDBLite | consensus disorder prediction | 216 | 251 | - | - | |
Cre10g1946 | 712 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 143 | 480 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre10g1946 | 712 | SMART | HOX_1 | 379 | 443 | IPR001356 | GO:0003677(InterPro) | |
Cre10g1946 | 712 | Gene3D | - | 374 | 453 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g1946 | Cre-Chr10:34169119 | Cre10g2260 | Cre-Chr10:36943790 | 3.50E-49 | dispersed | |
Cre08g1638 | Cre-Chr8:28886980 | Cre10g1946 | Cre-Chr10:34169119 | 1.40E-42 | transposed | |
Cre09g0262 | Cre-Chr9:2685876 | Cre10g1946 | Cre-Chr10:34169119 | 3.10E-71 | transposed | |
Cre09g2275 | Cre-Chr9:41969914 | Cre10g1946 | Cre-Chr10:34169119 | 1.40E-67 | transposed | |
Cre11g0897 | Cre-Chr11:6157965 | Cre10g1946 | Cre-Chr10:34169119 | 2.10E-83 | transposed | |
Cre10g1946 | Cre-Chr10:34169119 | Cre02g2551 | Cre-Chr2:38742831 | 1.10E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54592 | PF07526 | POX | 9.60E-50 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1946 | - | - | - | 0.0 |