Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1985 | ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTTCCCATCATGCTTAACCCCAAATCCTCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATATGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAATCCATATCCTTCTTCTCATCATCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCCGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG | 885 | 53.33 | MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34551782 | 34554836 | + | CrPI670011_10g019850.1 | Cre10g1985 | 511287 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1985 | 294 | MobiDBLite | consensus disorder prediction | 198 | 219 | - | - | |
Cre10g1985 | 294 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 38 | 234 | IPR044800 | GO:0003700(InterPro) | |
Cre10g1985 | 294 | MobiDBLite | consensus disorder prediction | 238 | 259 | - | - | |
Cre10g1985 | 294 | MobiDBLite | consensus disorder prediction | 241 | 259 | - | - | |
Cre10g1985 | 294 | SMART | B3_2 | 42 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cre10g1985 | 294 | Pfam | B3 DNA binding domain | 42 | 152 | IPR003340 | GO:0003677(InterPro) | |
Cre10g1985 | 294 | ProSiteProfiles | B3 DNA-binding domain profile. | 42 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cre10g1985 | 294 | MobiDBLite | consensus disorder prediction | 186 | 219 | - | - | |
Cre10g1985 | 294 | Gene3D | - | 33 | 161 | IPR015300 | - | |
Cre10g1985 | 294 | SUPERFAMILY | DNA-binding pseudobarrel domain | 40 | 153 | IPR015300 | - | |
Cre10g1985 | 294 | CDD | B3_DNA | 40 | 142 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2098 | Cre-Chr6:28776103 | Cre10g1985 | Cre-Chr10:34551782 | 4.90E-25 | dispersed | |
Cre09g2381 | Cre-Chr9:43162532 | Cre10g1985 | Cre-Chr10:34551782 | 1.10E-38 | dispersed | |
Cre10g1985 | Cre-Chr10:34551782 | Cre07g1170 | Cre-Chr7:24085315 | 1.50E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54595 | PF02362 | B3 | 9.00E-31 | CL0405 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1985 | K09287 | - | csv:101214938 | 474.167 |