Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1985 ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTTCCCATCATGCTTAACCCCAAATCCTCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATATGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAATCCATATCCTTCTTCTCATCATCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCCGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 885 53.33 MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34551782 34554836 + CrPI670011_10g019850.1 Cre10g1985 511287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1985 294 MobiDBLite consensus disorder prediction 198 219 - -
Cre10g1985 294 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 234 IPR044800 GO:0003700(InterPro)
Cre10g1985 294 MobiDBLite consensus disorder prediction 238 259 - -
Cre10g1985 294 MobiDBLite consensus disorder prediction 241 259 - -
Cre10g1985 294 SMART B3_2 42 153 IPR003340 GO:0003677(InterPro)
Cre10g1985 294 Pfam B3 DNA binding domain 42 152 IPR003340 GO:0003677(InterPro)
Cre10g1985 294 ProSiteProfiles B3 DNA-binding domain profile. 42 153 IPR003340 GO:0003677(InterPro)
Cre10g1985 294 MobiDBLite consensus disorder prediction 186 219 - -
Cre10g1985 294 Gene3D - 33 161 IPR015300 -
Cre10g1985 294 SUPERFAMILY DNA-binding pseudobarrel domain 40 153 IPR015300 -
Cre10g1985 294 CDD B3_DNA 40 142 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2098 Cre-Chr6:28776103 Cre10g1985 Cre-Chr10:34551782 4.90E-25 dispersed
Cre09g2381 Cre-Chr9:43162532 Cre10g1985 Cre-Chr10:34551782 1.10E-38 dispersed
Cre10g1985 Cre-Chr10:34551782 Cre07g1170 Cre-Chr7:24085315 1.50E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54595 PF02362 B3 9.00E-31 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1985 K09287 - csv:101214938 474.167