Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1992 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCACCGAGAACATGTAGAAACTTCATTGAGCTTTCCCGGCGAGGTTATTATGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATAGTGCAAGGTGGAGATCCCACAGGAACTGGACGGGGTGGGGAATCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCACACTGGAGCAGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCTATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTAAGGGCATCAGTTAAAGACTAA 495 44.04 MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34607109 34610829 + CrPI670011_10g019920.1 Cre10g1992 511294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1992 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Cre10g1992 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cre10g1992 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Cre10g1992 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 159 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Cre10g1992 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Cre10g1992 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre10g1992 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre10g1992 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre10g1992 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre10g1992 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre10g1992 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre10g1992 164 Gene3D - 3 164 IPR029000 -
Cre10g1992 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1992 K12733 - - csv:101222111 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1143 Cre-Chr1:22446514 Cre10g1992 Cre-Chr10:34607109 8.70E-44 dispersed
Cre05g0294 Cre-Chr5:2712998 Cre10g1992 Cre-Chr10:34607109 7.60E-37 dispersed
Cre05g1969 Cre-Chr5:31812645 Cre10g1992 Cre-Chr10:34607109 2.70E-38 dispersed
Cre09g1808 Cre-Chr9:36497006 Cre10g1992 Cre-Chr10:34607109 1.40E-29 dispersed
Cre10g1992 Cre-Chr10:34607109 Cre04g1378 Cre-Chr4:32602234 4.30E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g950 . . . . Bpe04g01516 . Bma04g01568 . Cmo06g00493 . . . . . . . Cpe08g00998 . . . . . . . . . . . . . . Cone3ag0170 . . . . . . Cme04g02374 . Blo09g00488 Bda03g01656 . . . . . Sed02g0502 . . Cma06g00492 Cma14g00328 Car06g00431 Car14g00298 Cpe03g00282 . Bhi11g02339 Tan08g1697 Cmetu05g0569 Lac10g2836 Hepe05g0401 . . Cla10g01783 Cam10g1838 Cec10g1892 Cco10g1866 Clacu10g1853 Cmu10g2603 Cre10g1992 Lsi03g01872 Csa03g03444 Chy04g01907 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008421 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35