Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2036 ATGGACTTTGATCTGAAGCAATGTAGAACACAGAGGGAGTCAGAGGAGCAACAACATTCTGCAAAGATTTCTAAGTTGTTTGTTGAACAGACCCATCATCTTTCTTCTTCTTCCACTTCTGTTCTTCCTTTGTTTGTACCTGCTGATTCCAACAACAACTCCAAAACTTCCAACATCTTGTCAGCATTTCAAGATTCAACTTCTTCTACATTACCCAGGATGCTGGGTTATTTCAGTGTGGCTCAAAGGCAAGAACTTGAACTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCCGCCGTCCCGCCGGAGCTTCTCCACCCTATTAAGAAAAGCCTTATCTCTTCCTCTTCTACTACTCCTTTCTTTCTTCATCATCCTCTTCAACATTTCCCTCACTATCCCACTTCTTTGTTGCAAGCAGGGTATTGGGGCAGAGCTGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCAAGAGATGTCGTCGCCGGCCAGAAATACTGTGAGCGCCATATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTACCACAACTAACCCCTCCACCACCGCCGCTGCTGCTGGCGGCGGTGGCGGCGGTTGTTCTCTCAGTTCCAACTCCAACCGTGTTATTGGTGGCGGTGGTGGTCGGCCTTTTTTGACTGTGGAAAGTGGAAATTATTTCTCTACGTGTGGACAAACCCCATCCGTTGATCTTCTCCATCTCAATCAAGGTTCTTGTTCTAATTCCCTATCAGAGAACAAGAAATTCTATGAATCCCACAAAGAGCCTTCCGCCGGAGATGCTAAATCCGACGGCCACATTTTAAGGCATTTTTTCGACGATTGGCCGCGGTCCGAAAATGGTGGTTGTGGGAATGACAGCAACAGTGTCAACCAACGAATGAACTCCACGTCTGCTTCCGCAACATCCCTTTCGATTTCAATGCCTGGGAACCCTCCGTCATCGTCTTCTGACGTGTCGTTGAAATTGTCGACAGGAGGAAGTTCTGATCAAGGCAGTGACCACCACATCCACCAAAATGGCAACGTTGACCGAGAACACGTGCAGTTGAATTGGGCTGCAGGATGGGCCGCCACGCAGATGGCGTCAATGGGCGGACCGCTGGCTGAAGCGCTGCGCTCCGCCAACAACAACTCGTTGCCAACGAGTGTGCTGCATCAGTTGCAAAGAACAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1269 49.8 MDFDLKQCRTQRESEEQQHSAKISKLFVEQTHHLSSSSTSVLPLFVPADSNNNSKTSNILSAFQDSTSSTLPRMLGYFSVAQRQELELQALIFRYMLAGAAVPPELLHPIKKSLISSSSTTPFFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETTTTNPSTTAAAAGGGGGGCSLSSNSNRVIGGGGGRPFLTVESGNYFSTCGQTPSVDLLHLNQGSCSNSLSENKKFYESHKEPSAGDAKSDGHILRHFFDDWPRSENGGCGNDSNSVNQRMNSTSASATSLSISMPGNPPSSSSDVSLKLSTGGSSDQGSDHHIHQNGNVDREHVQLNWAAGWAATQMASMGGPLAEALRSANNNSLPTSVLHQLQRTTNSEASFIST 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35054146 35056111 - CrPI670011_10g020360.1 Cre10g2036 511338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2036 422 ProSiteProfiles WRC domain profile. 151 195 IPR014977 -
Cre10g2036 422 PANTHER GROWTH-REGULATING FACTOR 5 47 336 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cre10g2036 422 MobiDBLite consensus disorder prediction 302 357 - -
Cre10g2036 422 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g2036 422 Pfam WRC 152 194 IPR014977 -
Cre10g2036 422 SMART QLQ_2 76 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g2036 422 MobiDBLite consensus disorder prediction 183 213 - -
Cre10g2036 422 MobiDBLite consensus disorder prediction 299 360 - -
Cre10g2036 422 Pfam QLQ 78 110 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0293 Cre-Chr5:2705949 Cre10g2036 Cre-Chr10:35054146 2.20E-25 dispersed
Cre10g2036 Cre-Chr10:35054146 Cre11g0644 Cre-Chr11:3575316 2.30E-27 dispersed
Cre10g2036 Cre-Chr10:35054146 Cre03g1789 Cre-Chr3:34733472 3.70E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54598 PF08879 WRC 2.70E-22 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2036 - - - 0.0