Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g2040 | ATGGCTTCTTCCTCCGGCCGCCACCCCGTCTACCGAGGTGTTCGCCGCCGCAACACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGACGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCGTCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCGGCCATGGAAGCACGAAATAATAACGGTTCTCGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATGGCGGAGACGATGACGGCGACAACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA | 549 | 53.73 | MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNSGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHGGDDDGDNGADQNLWNFP | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35113019 | 35113567 | - | CrPI670011_10g020400.1 | Cre10g2040 | 511342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g2040 | 182 | CDD | AP2 | 11 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | Pfam | AP2 domain | 9 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | SUPERFAMILY | DNA-binding domain | 10 | 69 | IPR016177 | GO:0003677(InterPro) | |
Cre10g2040 | 182 | Gene3D | AP2/ERF domain | 10 | 69 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | SMART | rav1_2 | 10 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | ProSiteProfiles | AP2/ERF domain profile. | 10 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | PRINTS | Ethylene responsive element binding protein signature | 11 | 22 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | PRINTS | Ethylene responsive element binding protein signature | 33 | 49 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g2040 | 182 | FunFam | Ethylene-responsive transcription factor 2 | 9 | 68 | - | - | |
Cre10g2040 | 182 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 6 | 181 | IPR045277 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1074 | Cre-Chr4:29446018 | Cre10g2040 | Cre-Chr10:35113019 | 8.60E-43 | dispersed | |
Cre09g2209 | Cre-Chr9:41243439 | Cre10g2040 | Cre-Chr10:35113019 | 6.90E-31 | dispersed | |
Cre10g0616 | Cre-Chr10:5707220 | Cre10g2040 | Cre-Chr10:35113019 | 4.50E-35 | dispersed | |
Cre10g2040 | Cre-Chr10:35113019 | Cre11g1934 | Cre-Chr11:31117500 | 1.40E-26 | dispersed | |
Cre10g2039 | Cre-Chr10:35103610 | Cre10g2040 | Cre-Chr10:35113019 | 2.00E-26 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54600 | PF00847 | AP2 | 8.70E-13 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g2040 | - | - | - | 0.0 |