Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2040 ATGGCTTCTTCCTCCGGCCGCCACCCCGTCTACCGAGGTGTTCGCCGCCGCAACACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGACGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCGTCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCGGCCATGGAAGCACGAAATAATAACGGTTCTCGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATGGCGGAGACGATGACGGCGACAACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA 549 53.73 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNSGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHGGDDDGDNGADQNLWNFP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35113019 35113567 - CrPI670011_10g020400.1 Cre10g2040 511342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2040 182 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 Pfam AP2 domain 9 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677(InterPro)
Cre10g2040 182 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2040 182 FunFam Ethylene-responsive transcription factor 2 9 68 - -
Cre10g2040 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 181 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1074 Cre-Chr4:29446018 Cre10g2040 Cre-Chr10:35113019 8.60E-43 dispersed
Cre09g2209 Cre-Chr9:41243439 Cre10g2040 Cre-Chr10:35113019 6.90E-31 dispersed
Cre10g0616 Cre-Chr10:5707220 Cre10g2040 Cre-Chr10:35113019 4.50E-35 dispersed
Cre10g2040 Cre-Chr10:35113019 Cre11g1934 Cre-Chr11:31117500 1.40E-26 dispersed
Cre10g2039 Cre-Chr10:35103610 Cre10g2040 Cre-Chr10:35113019 2.00E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54600 PF00847 AP2 8.70E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2040 - - - 0.0