Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2041 ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATCACTACTGCCCCATCTCGCTCTCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCACGGCCGCCGCCGCCGCCTTCCGCCACCACCATAATCCCTACGACCTCATCATGATGATGCCACGTGACACTCCGCTACCCGACTTTCGCTCCGATTCCGCCACCACACCACCCGCCATCGTCTCCGCTCAGCCAGGTCCCTCCGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCTCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAGGAAGCCAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCTTAGATTCCAACAGAACGGGACCAACAACCCGACTGCGGCACCTCCGATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTCAGCCTCTCGAACACGTCAGAGTTCGAAACCTCGGCCTCGTCAGATGGCAACGACGACCCCAGCTCGGTTGGCATTATGGACAACGATTCAATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCGAAAATCAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGCGAGGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGACAGGGAGAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAATCTAGAGATGCTGCATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATTGAGAGATAATCAATACAACTCCTCACCCGACCTCGGATTAATCGTAGCCGAGCGTCATAGAAATAATAACGAGAACCAAAACGAGGACGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTACTAGCAGACAACAATAATTACCAAAGGAAAATAATAGACAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCACCTACAATCTTTACTTCCAACAAACAGATTCCACCCTTTACAGTCGTGGCGGTGGCGGTGGCGGACCATACGGCGGTGCCACCGACATCAAAGAACAAAGTCCAAACAGTTCAAACGTGGGCGGCGGCGGCGGCGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA 1560 47.95 MEMDDQYALSDLRHLITTAPSRSHFPSSSSIPHHDLSSSTAAAAAFRHHHNPYDLIMMMPRDTPLPDFRSDSATTPPAIVSAQPGPSAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTAAPPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDPSSVGIMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWAKERAWIESRDAALMDALQRLTGRELRDNQYNSSPDLGLIVAERHRNNNENQNEDGSEILNNNTARELLADNNNYQRKIIDNQGNKKRKENSTSTATTYNLYFQQTDSTLYSRGGGGGGPYGGATDIKEQSPNSSNVGGGGGVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35130551 35133318 + CrPI670011_10g020410.1 Cre10g2041 511343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2041 519 MobiDBLite consensus disorder prediction 451 483 - -
Cre10g2041 519 MobiDBLite consensus disorder prediction 211 234 - -
Cre10g2041 519 Coils Coil 299 326 - -
Cre10g2041 519 CDD GT1 104 169 - -
Cre10g2041 519 FunFam trihelix transcription factor PTL-like 105 167 - -
Cre10g2041 519 MobiDBLite consensus disorder prediction 247 280 - -
Cre10g2041 519 MobiDBLite consensus disorder prediction 211 226 - -
Cre10g2041 519 MobiDBLite consensus disorder prediction 247 264 - -
Cre10g2041 519 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Cre10g2041 519 Gene3D - 105 167 - -
Cre10g2041 519 MobiDBLite consensus disorder prediction 469 483 - -
Cre10g2041 519 PANTHER FI21293P1 92 434 - -
Cre10g2041 519 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2337 Cre-Chr5:34987739 Cre10g2041 Cre-Chr10:35130551 4.70E-54 dispersed
Cre09g2389 Cre-Chr9:43285516 Cre10g2041 Cre-Chr10:35130551 7.70E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54601 PF13837 Myb_DNA-bind_4 2.40E-19 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2041 - - - 0.0