Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g2049 | ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGAGGCGGTGTTGCCGGAGCTTCGACAGCGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACGGATGGGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGGTGGCCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATGAGCTCTGTTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACCAGCCTGCCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTTAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAGGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATGCATTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTACTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGTCTAAAGCCAGTAGAGCCTGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTTTAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCATTGTATTTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCCCAAGACAGGGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATCTTATACAACCAACTGTCCAGGTTGAGGATTCAATCCCACTGAAGTACGTTCCACATATTAATCGTGGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACTTAAGGTTTGCACCGGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGCGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTATCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACCCGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGGCGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCCGCAGCTGGAACACCTGAATGGATGGCGCCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATCTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCACCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGCCCGGTCCAAAGCGGTCGCTTTCAGACCAAAAGGACCGGTCCACTAAAACCGTACGGACAAAAAGATGTAAAATCCCGCGTTGAAAGAATCCCCAGTGGGTTGTGGCCAGTTTCCCCCAACCACAATAACGGCCTTCCGAAACACCGCAGCTTCTGCGAAAACGATCTGATCAACGAAGGTCGGTTCTTCTTTCAATATTTGCCATTGCTTCCCTTCAATTTGTGGAGAATCCAAAGCCCTAAACTTTTTGGCAGTGTCTTAATGGGGTCCCGGCACGAGCAACGACACCACTGTAGAGCTACGACTCGATTCACAGTCACTGTCTCCACCGCCTTTGAATTTCTTTCCCCAGATTTTTATCCGACACCTTGTCGGCGGAAACTTCTGTTTTGCGCCCTTATATATACTCTGCTCCATTTACAGAAATTCATA | 3018 | 45.96 | MEMPGRRLNYTLLSQIPDDQYRGGVAGASTAFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQVAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSMSSVEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSLIEVVLIDRRTDPNLKDLQNWVQGISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFLDCQLLNVVFDEASSCNHSEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDSDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNLIQPTVQVEDSIPLKYVPHINRGSVQSLLDMSQPRMDSTMDLRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSTIMETLKPMTKQAPPQQGPVQSGRFQTKRTGPLKPYGQKDVKSRVERIPSGLWPVSPNHNNGLPKHRSFCENDLINEGRFFFQYLPLLPFNLWRIQSPKLFGSVLMGSRHEQRHHCRATTRFTVTVSTAFEFLSPDFYPTPCRRKLLFCALIYTLLHLQKFI | 1006 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35190531 | 35205002 | - | CrPI670011_10g020490.1 | Cre10g2049 | 511351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g2049 | 1006 | MobiDBLite | consensus disorder prediction | 854 | 884 | - | - | |
Cre10g2049 | 1006 | SUPERFAMILY | Protein kinase-like (PK-like) | 579 | 850 | IPR011009 | - | |
Cre10g2049 | 1006 | SMART | serkin_6 | 597 | 854 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | MobiDBLite | consensus disorder prediction | 854 | 872 | - | - | |
Cre10g2049 | 1006 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 139 | 853 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cre10g2049 | 1006 | FunFam | Serine/threonine-protein kinase CTR1 | 676 | 860 | - | - | |
Cre10g2049 | 1006 | Gene3D | Transferase(Phosphotransferase) domain 1 | 676 | 862 | - | - | |
Cre10g2049 | 1006 | Pfam | Protein tyrosine and serine/threonine kinase | 598 | 850 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 717 | 729 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | PRINTS | Tyrosine kinase catalytic domain signature | 711 | 729 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | PRINTS | Tyrosine kinase catalytic domain signature | 758 | 768 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | PRINTS | Tyrosine kinase catalytic domain signature | 821 | 843 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | PRINTS | Tyrosine kinase catalytic domain signature | 671 | 684 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | PRINTS | Tyrosine kinase catalytic domain signature | 777 | 799 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g2049 | 1006 | CDD | STKc_MAP3K-like | 603 | 850 | - | - | |
Cre10g2049 | 1006 | ProSitePatterns | Protein kinases ATP-binding region signature. | 603 | 624 | IPR017441 | GO:0005524(InterPro) | |
Cre10g2049 | 1006 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 193 | 397 | - | - | |
Cre10g2049 | 1006 | Gene3D | Phosphorylase Kinase; domain 1 | 590 | 675 | - | - | |
Cre10g2049 | 1006 | FunFam | Serine/threonine-protein kinase isoform 1 | 587 | 675 | - | - | |
Cre10g2049 | 1006 | ProSiteProfiles | Protein kinase domain profile. | 597 | 854 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g2049 | Cre-Chr10:35190531 | Cre11g1883 | Cre-Chr11:30496870 | 3.80E-174 | dispersed | |
Cre01g1406 | Cre-Chr1:27318131 | Cre10g2049 | Cre-Chr10:35190531 | 1.10E-120 | transposed | |
Cre02g2094 | Cre-Chr2:34420950 | Cre10g2049 | Cre-Chr10:35190531 | 4.30E-71 | transposed | |
Cre05g1730 | Cre-Chr5:28995321 | Cre10g2049 | Cre-Chr10:35190531 | 5.40E-40 | transposed | |
Cre05g1949 | Cre-Chr5:31636477 | Cre10g2049 | Cre-Chr10:35190531 | 2.70E-116 | transposed | |
Cre06g1214 | Cre-Chr6:6022326 | Cre10g2049 | Cre-Chr10:35190531 | 2.50E-91 | transposed | |
Cre10g2049 | Cre-Chr10:35190531 | Cre04g1072 | Cre-Chr4:29424234 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64491 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-70 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g2049 | K14510 | - | csv:101208452 | 1639.01 |