Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2049 ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGAGGCGGTGTTGCCGGAGCTTCGACAGCGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACGGATGGGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGGTGGCCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATGAGCTCTGTTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACCAGCCTGCCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTTAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAGGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATGCATTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTACTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGTCTAAAGCCAGTAGAGCCTGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTTTAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCATTGTATTTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCCCAAGACAGGGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATCTTATACAACCAACTGTCCAGGTTGAGGATTCAATCCCACTGAAGTACGTTCCACATATTAATCGTGGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACTTAAGGTTTGCACCGGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGCGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTATCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACCCGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGGCGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCCGCAGCTGGAACACCTGAATGGATGGCGCCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATCTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCACCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGCCCGGTCCAAAGCGGTCGCTTTCAGACCAAAAGGACCGGTCCACTAAAACCGTACGGACAAAAAGATGTAAAATCCCGCGTTGAAAGAATCCCCAGTGGGTTGTGGCCAGTTTCCCCCAACCACAATAACGGCCTTCCGAAACACCGCAGCTTCTGCGAAAACGATCTGATCAACGAAGGTCGGTTCTTCTTTCAATATTTGCCATTGCTTCCCTTCAATTTGTGGAGAATCCAAAGCCCTAAACTTTTTGGCAGTGTCTTAATGGGGTCCCGGCACGAGCAACGACACCACTGTAGAGCTACGACTCGATTCACAGTCACTGTCTCCACCGCCTTTGAATTTCTTTCCCCAGATTTTTATCCGACACCTTGTCGGCGGAAACTTCTGTTTTGCGCCCTTATATATACTCTGCTCCATTTACAGAAATTCATA 3018 45.96 MEMPGRRLNYTLLSQIPDDQYRGGVAGASTAFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQVAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSMSSVEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSLIEVVLIDRRTDPNLKDLQNWVQGISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFLDCQLLNVVFDEASSCNHSEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDSDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNLIQPTVQVEDSIPLKYVPHINRGSVQSLLDMSQPRMDSTMDLRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSTIMETLKPMTKQAPPQQGPVQSGRFQTKRTGPLKPYGQKDVKSRVERIPSGLWPVSPNHNNGLPKHRSFCENDLINEGRFFFQYLPLLPFNLWRIQSPKLFGSVLMGSRHEQRHHCRATTRFTVTVSTAFEFLSPDFYPTPCRRKLLFCALIYTLLHLQKFI 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35190531 35205002 - CrPI670011_10g020490.1 Cre10g2049 511351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2049 1006 MobiDBLite consensus disorder prediction 854 884 - -
Cre10g2049 1006 SUPERFAMILY Protein kinase-like (PK-like) 579 850 IPR011009 -
Cre10g2049 1006 SMART serkin_6 597 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 MobiDBLite consensus disorder prediction 854 872 - -
Cre10g2049 1006 PANTHER SERINE-THREONINE PROTEIN KINASE 139 853 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre10g2049 1006 FunFam Serine/threonine-protein kinase CTR1 676 860 - -
Cre10g2049 1006 Gene3D Transferase(Phosphotransferase) domain 1 676 862 - -
Cre10g2049 1006 Pfam Protein tyrosine and serine/threonine kinase 598 850 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 PRINTS Tyrosine kinase catalytic domain signature 711 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 PRINTS Tyrosine kinase catalytic domain signature 758 768 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 PRINTS Tyrosine kinase catalytic domain signature 821 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 PRINTS Tyrosine kinase catalytic domain signature 671 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2049 1006 CDD STKc_MAP3K-like 603 850 - -
Cre10g2049 1006 ProSitePatterns Protein kinases ATP-binding region signature. 603 624 IPR017441 GO:0005524(InterPro)
Cre10g2049 1006 Pfam Ethylene-responsive protein kinase Le-CTR1 193 397 - -
Cre10g2049 1006 Gene3D Phosphorylase Kinase; domain 1 590 675 - -
Cre10g2049 1006 FunFam Serine/threonine-protein kinase isoform 1 587 675 - -
Cre10g2049 1006 ProSiteProfiles Protein kinase domain profile. 597 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g2049 Cre-Chr10:35190531 Cre11g1883 Cre-Chr11:30496870 3.80E-174 dispersed
Cre01g1406 Cre-Chr1:27318131 Cre10g2049 Cre-Chr10:35190531 1.10E-120 transposed
Cre02g2094 Cre-Chr2:34420950 Cre10g2049 Cre-Chr10:35190531 4.30E-71 transposed
Cre05g1730 Cre-Chr5:28995321 Cre10g2049 Cre-Chr10:35190531 5.40E-40 transposed
Cre05g1949 Cre-Chr5:31636477 Cre10g2049 Cre-Chr10:35190531 2.70E-116 transposed
Cre06g1214 Cre-Chr6:6022326 Cre10g2049 Cre-Chr10:35190531 2.50E-91 transposed
Cre10g2049 Cre-Chr10:35190531 Cre04g1072 Cre-Chr4:29424234 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64491 PF07714 PK_Tyr_Ser-Thr 2.10E-70 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2049 K14510 - csv:101208452 1639.01