Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2052 ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGGCCTGGAGAGGAGAAGATACTGCATCTGTCACAGGCCTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACACTATCCTCAGAGAAGTTCCCACAAGTGTCTTTTGATCTGCTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAACGGAAATACTGATTCTGAAGAGGATTTTCCTCTAGCTGCCATTGACAACGGAAAGCCAGAGCCAGAGCAAGCACCTAAGAAAGATGCAAAGCCTGATACTTCTGGAGCGAAGAAAAAGGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTAATTCAATTATTGCTAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGACGAAGATGAAGAGAGCACAGATGATGAGAATGCAAATGGGGGTGAAGAAGATGATAGTGATGATGATGAAAATGAGTTTTCTGGAGTTGATAGTGAAGACTCTGATGAGGACTCGGACGACAGTTTAGAAGAGGATGAGCAGACACCAAAAAAGGCTGAAGCAAGCAAGAAAAGACCTTTAGATTCTGCTAATAAGACGCCTGCTCCTGACAAGAAGGCAAAACTCGTCACTCCTCAGAAGACTGATGGCAAGAAAGGCGTTGCTCATGTAGCTACTCCTCATCCTTCAAAGAAGACCGGGAAAATGCCCGCTGCTAATGACAAAAATAAGCAGCAGACTCCCAAACTAGCTGGCGCCACATTCCCTTGCAAAACTTGCAACAGGACATTTGGGTCAGAAACTGCGTTACAATCCCACTCAAAAGCCAAGCACACAGCCGAGAAGTGA 903 44.52 MEFWGAEVKVGEPLLVRPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLLFDKEFELSHNWKNGNTDSEEDFPLAAIDNGKPEPEQAPKKDAKPDTSGAKKKVQIVEPNKGGSNSIIASKKNEDSSDEDDDEDEESTDDENANGGEEDDSDDDENEFSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVATPHPSKKTGKMPAANDKNKQQTPKLAGATFPCKTCNRTFGSETALQSHSKAKHTAEK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35238967 35242921 + CrPI670011_10g020520.1 Cre10g2052 511354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2052 300 Gene3D Nucleoplasmin core domain 1 88 - -
Cre10g2052 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Cre10g2052 300 MobiDBLite consensus disorder prediction 83 273 - -
Cre10g2052 300 Pfam C2H2-type zinc finger 273 296 IPR013087 -
Cre10g2052 300 Pfam Nucleoplasmin-like domain 3 84 IPR041232 -
Cre10g2052 300 FunFam Histone deacetylase HDT1 1 88 - -
Cre10g2052 300 ProSitePatterns Zinc finger C2H2 type domain signature. 275 296 IPR013087 -
Cre10g2052 300 MobiDBLite consensus disorder prediction 104 121 - -
Cre10g2052 300 MobiDBLite consensus disorder prediction 196 220 - -
Cre10g2052 300 MobiDBLite consensus disorder prediction 146 195 - -
Cre10g2052 300 Gene3D Classic Zinc Finger 271 299 - -
Cre10g2052 300 SMART c2h2final6 273 296 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2496 Cre-Chr2:38230208 Cre10g2052 Cre-Chr10:35238967 8.50E-45 dispersed
Cre10g2052 Cre-Chr10:35238967 Cre02g2495 Cre-Chr2:38225063 3.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54602 PF17800 NPL 2.00E-10 CL0055 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2052 - - - 0.0