Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g2052 | ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGGCCTGGAGAGGAGAAGATACTGCATCTGTCACAGGCCTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACACTATCCTCAGAGAAGTTCCCACAAGTGTCTTTTGATCTGCTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAACGGAAATACTGATTCTGAAGAGGATTTTCCTCTAGCTGCCATTGACAACGGAAAGCCAGAGCCAGAGCAAGCACCTAAGAAAGATGCAAAGCCTGATACTTCTGGAGCGAAGAAAAAGGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTAATTCAATTATTGCTAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGACGAAGATGAAGAGAGCACAGATGATGAGAATGCAAATGGGGGTGAAGAAGATGATAGTGATGATGATGAAAATGAGTTTTCTGGAGTTGATAGTGAAGACTCTGATGAGGACTCGGACGACAGTTTAGAAGAGGATGAGCAGACACCAAAAAAGGCTGAAGCAAGCAAGAAAAGACCTTTAGATTCTGCTAATAAGACGCCTGCTCCTGACAAGAAGGCAAAACTCGTCACTCCTCAGAAGACTGATGGCAAGAAAGGCGTTGCTCATGTAGCTACTCCTCATCCTTCAAAGAAGACCGGGAAAATGCCCGCTGCTAATGACAAAAATAAGCAGCAGACTCCCAAACTAGCTGGCGCCACATTCCCTTGCAAAACTTGCAACAGGACATTTGGGTCAGAAACTGCGTTACAATCCCACTCAAAAGCCAAGCACACAGCCGAGAAGTGA | 903 | 44.52 | MEFWGAEVKVGEPLLVRPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLLFDKEFELSHNWKNGNTDSEEDFPLAAIDNGKPEPEQAPKKDAKPDTSGAKKKVQIVEPNKGGSNSIIASKKNEDSSDEDDDEDEESTDDENANGGEEDDSDDDENEFSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVATPHPSKKTGKMPAANDKNKQQTPKLAGATFPCKTCNRTFGSETALQSHSKAKHTAEK | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35238967 | 35242921 | + | CrPI670011_10g020520.1 | Cre10g2052 | 511354 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g2052 | 300 | Gene3D | Nucleoplasmin core domain | 1 | 88 | - | - | |
Cre10g2052 | 300 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 273 | 300 | IPR013087 | - | |
Cre10g2052 | 300 | MobiDBLite | consensus disorder prediction | 83 | 273 | - | - | |
Cre10g2052 | 300 | Pfam | C2H2-type zinc finger | 273 | 296 | IPR013087 | - | |
Cre10g2052 | 300 | Pfam | Nucleoplasmin-like domain | 3 | 84 | IPR041232 | - | |
Cre10g2052 | 300 | FunFam | Histone deacetylase HDT1 | 1 | 88 | - | - | |
Cre10g2052 | 300 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 275 | 296 | IPR013087 | - | |
Cre10g2052 | 300 | MobiDBLite | consensus disorder prediction | 104 | 121 | - | - | |
Cre10g2052 | 300 | MobiDBLite | consensus disorder prediction | 196 | 220 | - | - | |
Cre10g2052 | 300 | MobiDBLite | consensus disorder prediction | 146 | 195 | - | - | |
Cre10g2052 | 300 | Gene3D | Classic Zinc Finger | 271 | 299 | - | - | |
Cre10g2052 | 300 | SMART | c2h2final6 | 273 | 296 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2496 | Cre-Chr2:38230208 | Cre10g2052 | Cre-Chr10:35238967 | 8.50E-45 | dispersed | |
Cre10g2052 | Cre-Chr10:35238967 | Cre02g2495 | Cre-Chr2:38225063 | 3.90E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54602 | PF17800 | NPL | 2.00E-10 | CL0055 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g2052 | - | - | - | 0.0 |