Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2058 ATGATGATGATGATGATGATGATGGGGAAGGGGAAGGGGAAGGTGGGGGTGAAGATTTTCAGTTCCGCCATAACTTTCTTTTTCACTCTTACCCTTTTGGTCTCTCCTTCTCTTTCTTCAGATGATTCTTCTGCTCTCACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGGGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTAGATCAGCTTCGCCATCTTGACCTCCATGACAACCGTTTGAACGGAACCATTTCGCCGCTTGTTAACTGTACGAATCTTAAACTGTTGTATCTTTCCGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTCCTCCGGCTGGATTTGTCCGATAACAACATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTAGGCTCCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCTGATCTCTCTGTTTCGCTTGTGAACCTCACTGAACTTAATTTAACCAACAATGAACTGTACGGACGGTTGCCGGACGGGATGTTGAAGAAATTCGGTGAGAAGAGTTTCACTGGAAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTGGTTCACCGCCGACGTCGGATTCTACCAGAACGGTACCTTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTAGTCCGAACAGTAAAGAATCTCGAAGAGGGCTCAGCCCTGGCGTGATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTGCTTGTGATTATCTCGTTCATCGTCGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCGAGTTCCATGACCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAAGTGTACGCCAATGGCGGTGGTGACAGTGATGGCACTAACGCGACAGACAGAAGCAAACTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACCGTGCGGTTCTTGACGACGGTTGTACGGTGGCGGTGAAGAGGTTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATTGGGAAGCTGAAACATCCCAATATTGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTCTATGATTATCTTCCTAATGGGAGTCTACATTCTCTTCTCCATGGAAATCGAGGCCCAGGGAGGATTCCATTGGATTGGACGACCAGGATCAGTTTAGTTCTGGGAGCTGCTCGTGGCTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATTCCCCATGGGAATGTCAAATCTTCCAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTATCTTTGCTTCTCAACCCAGTCCATGCCATTGCAAGGTTGGGAGGCTACAAGGCCCCGGAACAAGACGAGACTAAACGCCTCTCTCAAAAAGCAGATGTTTATAGCTTTGGAGTCTTATTGCTCGAAGTCTTAACAGGACGTGCACCGTCGCTCTACCCGTCACCTTCGAACCCAAGAAGCGATGACGAAGAGCAGCCAGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTAAGGTACAAGAACATTGAGGAGGAGCTTGTGTCCATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCGGAAGTGGCGAAGATGATCGAAGATATTAGGGTCGAGCAATCCCCGCTCGGAGAAGATTACGACGAATCGCGCAATTCGCTTTCGCCTTCCCTAGCCACCACAGAAGATGGTATGTAG 2064 48.5 MMMMMMMMGKGKGKVGVKIFSSAITFFFTLTLLVSPSLSSDDSSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRHLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELYGRLPDGMLKKFGEKSFTGNEGVCGSSPLPICSVTGSPPTSDSTRTVPSNPSSLPQNPIISPNSKESRRGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGM 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35281270 35283437 + CrPI670011_10g020580.1 Cre10g2058 511360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2058 687 Gene3D Ribonuclease Inhibitor 36 120 IPR032675 -
Cre10g2058 687 ProSiteProfiles Protein kinase domain profile. 378 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2058 687 SMART LRR_typ_2 199 223 IPR003591 -
Cre10g2058 687 SMART LRR_typ_2 151 175 IPR003591 -
Cre10g2058 687 SMART LRR_typ_2 104 128 IPR003591 -
Cre10g2058 687 Pfam Protein tyrosine and serine/threonine kinase 382 653 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2058 687 SUPERFAMILY Protein kinase-like (PK-like) 382 655 IPR011009 -
Cre10g2058 687 Gene3D Transferase(Phosphotransferase) domain 1 454 676 - -
Cre10g2058 687 MobiDBLite consensus disorder prediction 246 281 - -
Cre10g2058 687 Pfam Leucine Rich repeats (2 copies) 106 141 IPR025875 -
Cre10g2058 687 FunFam pollen receptor-like kinase 1 349 453 - -
Cre10g2058 687 CDD STKc_IRAK 384 658 - -
Cre10g2058 687 MobiDBLite consensus disorder prediction 317 352 - -
Cre10g2058 687 MobiDBLite consensus disorder prediction 317 332 - -
Cre10g2058 687 MobiDBLite consensus disorder prediction 662 687 - -
Cre10g2058 687 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 454 667 - -
Cre10g2058 687 FunFam Leucine-rich repeat receptor-like protein kinase 39 194 - -
Cre10g2058 687 MobiDBLite consensus disorder prediction 669 687 - -
Cre10g2058 687 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515(InterPro)
Cre10g2058 687 Gene3D Phosphorylase Kinase; domain 1 351 453 - -
Cre10g2058 687 PANTHER OS05G0588300 PROTEIN 25 664 IPR050994 -
Cre10g2058 687 SUPERFAMILY L domain-like 40 220 - -
Cre10g2058 687 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Cre10g2058 687 Gene3D Ribonuclease Inhibitor 121 245 IPR032675 -
Cre10g2058 687 MobiDBLite consensus disorder prediction 246 280 - -
Cre10g2058 687 Pfam Leucine Rich Repeat 154 175 IPR001611 GO:0005515(InterPro)
Cre10g2058 687 Pfam Leucine Rich Repeat 201 219 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1323 Cre-Chr4:32050929 Cre10g2058 Cre-Chr10:35281270 1.40E-71 dispersed
Cre05g2421 Cre-Chr5:35664947 Cre10g2058 Cre-Chr10:35281270 1.90E-63 dispersed
Cre10g2058 Cre-Chr10:35281270 Cre11g0631 Cre-Chr11:3497722 4.60E-70 dispersed
Cre10g2058 Cre-Chr10:35281270 Cre11g0754 Cre-Chr11:4739809 2.70E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64492 PF00069 Pkinase 3.20E-33 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2058 - - - 0.0