Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2064 ATGGATAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGTCTCTCTTTATTCAGAGAGTTTGGAGGCGCTTCAGAGCGACTAAGATAGCTGCTTTGCAGCTTCAAGAAGAATGGGAGGAGTTGGTGAATAATCATTCTGGTGCACGGGGTGGCACATTCATTTCCTATAATATTTTGAGACCATTTCTCTTCTTTATCTCGTCATTTCTGAAACGACCTCAAAATATCAAGACCAAAGATATAGCCTGTATGAAGAATTGCTTTAAAATCTTGTTTGAAAGCATAAATTCTACTGAATCAAAGAACAACTTTTGCTCTTTGGCCACTGGTACATCTGAAGGAAGAAGAACATGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTCGACAAGTTACAAGTGAAGGAGCAAGAAATTGTTGTTACGACCTCTTTGGCCATGCGCCTTATAGTTGTCTTAACTGATCATCATGGGTGGAAGAGTGTTAATGAGAACAGTCGTGCTGCTGCTGATGCAGCCGTGAAGGATTTAGTTCATTATTTGGGAACTTCTGAAAGTGGTCTTTATGTATCAGTCAGGCAATACATGTATAAGTTGAGTGTCCTCCAGTCTACGCAGACCAACAGTACCATCCAGGCAAATGATTTATTAGTCACTTCTGTGAGTGCAATAACTTTAGCATTACGACCATTTCATTTAATGAATTTTGATACAATTGGTACTACTTCGTGGGAAGGGCATCATGTTGCTGAACAGTTTTGCTTGTATCTACTGACAATTCCCGGGCTTGTTCAAAATCTGCCACAAGTTCTTGTGCCAGCTGTCAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTGTTGGGAATGTCGGACATGGATCAGTTATCAGTTGAATGTGGCTCTAAGGTTGTTCCGGCAGTTGGGTGGGCTCTTGCTAACATTATATGTTTGGTAGCTGGGAGTGAAGCTAAAGCAAGGGATTCCGGTTGGTTCAGTCAGAGTTTAGACTATGTGTTGTATGTTCATGTGGTTGTCACTTTGGCAGAAAGCTTTTTGGCTTTGAATGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATACAGAGCGACAATGTAACTTCATATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAATGTCATCTATGTCCTTAAGCACATCCTTCATCGATATGTTTAGGCCTATTTGTGAACAGAGGCATCTCACAGATCTTTTGAAAATGGTAAATACAAATGTTTATTCTGAAAGTAGCACTGCACAATCAAATAATATGGAATGTATGAAAAGCTTGAAACTGCTCGATATATCATACTTCTACATGTACATGCTCAGAATATTTTCATTATTGAATCCGTCGGTCGGATCCATACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAATGTTGCTGATGAAGCCGATGATCACTTTCCTGGCTCAAGTAAAATATCAAGTAAAAGAAAAGATGAAGTTTTTGGCAAAAAGCAAAACCAAGTCAGTAAGGATGGAAGTAGTAGGTGGGTAACTGTCTTCCATAAATTCACGAGCAAGTCACAACCGGGTAGTGATCATATGGACACAATTGAAGTTCAATCTAGTTCAAGACAGGGGGATGACAACTTATGCGATTTATGGGACATAAAATCTTTGAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGATGACATAGAGTTCTATGAAAAACAGGTTCCATTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAACACGCTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAAAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCACCTGCTGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTACCCTGTGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATCAGCTAACTTACGGGCAGATGATACTTTAACAGTTCCAAGTGTAGGATCAATTATTACTACCACACCACATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTTAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGTAGCCATGTTGTTGAAGATGGATTCAGACAGTTAAATTCTCTGGGGTCAAGGCTGAAATCAGCTATCCATGTTTCTTTTGTTAGTGAATGTGGCCTTCCTGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTGACTGATATAGCCAAAGCAGCATTTTCACCTGAATATGGACTATTCTCTCAAACCTCTACTCCAGACAGGCATCTTATCCCTAATGCATCTGCACGATATCTCGACAATGGTATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGACTACTCATTTTCGCATGCTTTTGTCCACAAGCTTTTAGGCCGGTATAGCTTCCTTGATGAGCTATCAACACTTGATCCTGAGCTCTACAAGAATCTCATGTATGTCAAGTCTTATGAGGGTGATGTGAAAGAACTCTCGCTGGATTTCACTGTAACTGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATCGCTGATTATAAACTTAATCGACAGATATTGCCTTTTTCAAACGCGTTTTATAGGGGTTTAACTGATCTTATATCACCGTCTTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGTGGAAAACATGATATTGACGTTGATGATTTGAGGAAGAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACAATTAGTATTTTCTGGGAGGTTATGAAAGGATTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTCTTTTACCATCCATAAGGTTTCGTGTGACGTACCTATATGGGCTTCAATTGGAGGACAGGATGTCGAGCGGCTTCCAACTGCTTCCACTTGCTATAATACTCTCAAGCTTCCTACATATAAGCGTTCGAGATTTGAACTTTCTTAATGTATCTGACATCAGGCTGGCAGCTGATTGGTCCAAAGCTACATCTAATAATTCACTAGTCAGTGCATAA 3483 40.54 MDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAASLFIQRVWRRFRATKIAALQLQEEWEELVNNHSGARGGTFISYNILRPFLFFISSFLKRPQNIKTKDIACMKNCFKILFESINSTESKNNFCSLATGTSEGRRTWTYQSRKLISVCLFILVHFDKLQVKEQEIVVTTSLAMRLIVVLTDHHGWKSVNENSRAAADAAVKDLVHYLGTSESGLYVSVRQYMYKLSVLQSTQTNSTIQANDLLVTSVSAITLALRPFHLMNFDTIGTTSWEGHHVAEQFCLYLLTIPGLVQNLPQVLVPAVKHRSILLPCFWTLLAKKETILLGMSDMDQLSVECGSKVVPAVGWALANIICLVAGSEAKARDSGWFSQSLDYVLYVHVVVTLAESFLALNGDLGCGKKENQDIQSDNVTSYEPSDAAVLKNEMSSMSLSTSFIDMFRPICEQRHLTDLLKMVNTNVYSESSTAQSNNMECMKSLKLLDISYFYMYMLRIFSLLNPSVGSIPILNMLSFTPGFLVDLWGVLESSLFPNVADEADDHFPGSSKISSKRKDEVFGKKQNQVSKDGSSRWVTVFHKFTSKSQPGSDHMDTIEVQSSSRQGDDNLCDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLLYERDCRHQFCPPTLWLSPARTSRPPVAVAARTHEALSANLRADDTLTVPSVGSIITTTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVVEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFSQTSTPDRHLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHAFVHKLLGRYSFLDELSTLDPELYKNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGKHDIDVDDLRKNTRYTGGYTEGSRTISIFWEVMKGFEPKDRCLLLKFLLPSIRFRVTYLYGLQLEDRMSSGFQLLPLAIILSSFLHISVRDLNFLNVSDIRLAADWSKATSNNSLVSA 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35335986 35350391 + CrPI670011_10g020640.1 Cre10g2064 511366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2064 1160 CDD HECTc 801 1090 IPR000569 GO:0004842(InterPro)
Cre10g2064 1160 SUPERFAMILY Hect, E3 ligase catalytic domain 800 1091 IPR035983 GO:0004842(InterPro)
Cre10g2064 1160 Gene3D Hect, E3 ligase catalytic domain 1044 1118 - -
Cre10g2064 1160 ProSiteProfiles HECT domain profile. 825 1118 IPR000569 GO:0004842(InterPro)
Cre10g2064 1160 SMART hect_3 819 1139 IPR000569 GO:0004842(InterPro)
Cre10g2064 1160 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 2 1089 IPR044611 GO:0000209(PANTHER)|GO:0000209(InterPro)|GO:0006511(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Cre10g2064 1160 Gene3D Hect, E3 ligase catalytic domain 927 1006 - -
Cre10g2064 1160 FunFam Putative Ubiquitin-protein ligase E3C 927 1006 - -
Cre10g2064 1160 Pfam HECT-domain (ubiquitin-transferase) 856 1090 IPR000569 GO:0004842(InterPro)
Cre10g2064 1160 Gene3D Hect, E3 ligase catalytic domains 803 1041 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1196 Cre-Chr6:5808828 Cre10g2064 Cre-Chr10:35335986 5.80E-69 dispersed
Cre10g0671 Cre-Chr10:6337057 Cre10g2064 Cre-Chr10:35335986 1.70E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2064 K10588 - csv:101205886 1972.21