Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2069 ATGCGGGCCTTCTCTTCCTTGATCTTGGCCTTAGCATTCGCCGTTCTGCCGGCGACGGTGGTTTACTGTGGCTTCCCCGTCCCACTTCTCTCTCTGCACAGGGCCTTCCCTTCTTCTCTCCCTGTCCAACTCGAAACCCTCAGAGCTCGGGACCGACTCAGGCATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTACTCGTCGGGCTGTACTTTACCAAAGTCAAATTGGGCACTCCCCCGATGGAATTTACGGTACAGATCGACACTGGAAGTGATATATTGTGGGTTAACTGCAATTCCTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCATCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACGACTGCAACACAGTGTTTAACTCAGAGTAATCAATGCAGTTACACCTTTCAGTATGGCGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTCATGGGACATTCTATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGTTGTAGCACCTATCAGTCCGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGATAACCCCTAAAGTATTTTCCCATTGTTTAAAGGGAGAAGGAAATGGTGGTGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATCGCTGTCAATGGTCAGACACTGCCAATTGATCCGTCTGTGTTTGCAACATCAGTAAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAGTGCTATAACTGCTGCTGTTTCCCAATCTGTAACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACTAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTTGCCGGCAGTGCATCTATGGTGTTAAAACCCGAAGAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTGTGGTGCATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATCTTAGGAGATCTTGTTATGAAAGATAAGATATTTGTATATGATTTGGCTCGCCAGCGAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCAGTCACATCTGGGAAGAATGAGTTCGTCAATGCAGGGCAGTTGAGCGTGAGCGGCTCAACCCGAGATAAGCTTCTTCAATCACTAACTATGGTAGCATTAGCAATGTTAATGAGTCTCATTTTGTTCATCCACTCCCAACTTCTGTGTTTGAGCGATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTCTACGTTGGCGACCTTCATCCTGATGTCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGGCGCTCTCTCTCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGCGATGCCGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCGGAGGATTCTGCAAATGCTGCCATAGATTCAATGAATGGTTTTACCATTGGTGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCAGAGATTGGGGAAGAGCATTTGCAGGAGAAGTTCTCTGAGTTTGGAAAGATTTCCAGCATGATTATTTCACGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATAAACTTTGACAACTCTGATAATGCCAAACGGGCTTTGGAAACACTTAATGGATCGCAACTTGGTTCTAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCGAATCCTGATGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCCATAGCACAAAGAAAAGAGGATAGACAAATGCAATTAAAGCTTCAGTTTGCACAACGGCTGGCAGGGATTCCTGGACCGTCAACTACAATTTTTCCTGGTGGATACCCACCTTATTACTACCCAGCACCAGGTGTTGTTCCACCAGTACCATCTCGTCCAGGTCTGATGTTTCCGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTATACATCTCCTGCAAGACCTGGCTTTCAACCTTCACCTGTACCTATTATTCCAAATGCTTCGAGGCAACCCAGGCAAAACAGAGGTAAAATGAATGGACCAATGCTTTCTCATCAAAATGGAGTCCAAGCCGTCTCTTATATGCAAAATTCACAGGATGCCAATCAATCAGTTGTTACTACAAAATCATCCGGCAATCAACAGAATGGTTTCTGTGGTTATTTGTTTTTCTATCTGTTGGGATCTCTTCAATTTTCTTGTGTTGAACTGAAAGGTGCTGATGGTACTAATTTGGACAAAGTTTTAGTTAAGTATGTCCCAAATGCTCGGCCATGCGAAACAAACAAAGCTTCTGGCCCCGCCTCAGCTGCTGCCTTTAATTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGACCTTGCTGCAAAAATTACCGGTATGCTTCTGGAGATGGACAACTCGGAGTTGCTGCTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTGTCCAACCAAGACACACTCAGTTTCTTACCAGCTGAGCTTGCAGGTCAGGATGGAATGCTTGTTTGGAACTTGGATTTGTCGAATGCTGTTTTCTAA 3555 44.08 MRAFSSLILALAFAVLPATVVYCGFPVPLLSLHRAFPSSLPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCLTQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSVNRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMHLGFYDGAALWCIGFQKVQEGVTILGDLVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSGKNEFVNAGQLSVSGSTRDKLLQSLTMVALAMLMSLILFIHSQLLCLSDFLFAMAAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIDSMNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFDNSDNAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVPSRPGLMFPPLGMRPGWRANTYTSPARPGFQPSPVPIIPNASRQPRQNRGKMNGPMLSHQNGVQAVSYMQNSQDANQSVVTTKSSGNQQNGFCGYLFFYLLGSLQFSCVELKGADGTNLDKVLVKYVPNARPCETNKASGPASAAAFNSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLSFLPAELAGQDGMLVWNLDLSNAVF 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35373422 35384818 - CrPI670011_10g020690.1 Cre10g2069 511371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2069 1184 FunFam Polyadenylate-binding protein 684 778 - -
Cre10g2069 1184 Gene3D - 779 883 IPR012677 -
Cre10g2069 1184 SMART poly_2 1086 1149 IPR002004 GO:0003723(InterPro)
Cre10g2069 1184 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Cre10g2069 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 602 679 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 796 873 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 Pfam RNA recognition motif 695 763 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 Pfam RNA recognition motif 798 866 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 Pfam RNA recognition motif 516 586 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 Pfam RNA recognition motif 604 672 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1074 1151 IPR002004 GO:0003723(InterPro)
Cre10g2069 1184 PANTHER RNA BINDING PROTEIN 693 950 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cre10g2069 1184 FunFam Polyadenylate-binding protein 779 887 - -
Cre10g2069 1184 FunFam Aspartic proteinase-like protein 2 266 444 - -
Cre10g2069 1184 CDD RRM4_I_PABPs 795 873 - -
Cre10g2069 1184 CDD pepsin_A_like_plant 79 437 IPR034161 -
Cre10g2069 1184 SUPERFAMILY RNA-binding domain, RBD 794 887 IPR035979 GO:0003676(InterPro)
Cre10g2069 1184 Coils Coil 765 785 - -
Cre10g2069 1184 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cre10g2069 1184 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cre10g2069 1184 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cre10g2069 1184 Gene3D Acid Proteases 266 444 IPR021109 -
Cre10g2069 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 514 592 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 FunFam Polyadenylate-binding protein 599 683 - -
Cre10g2069 1184 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 514 1147 IPR006515 GO:0003723(InterPro)
Cre10g2069 1184 FunFam Polyadenylate-binding protein 506 598 - -
Cre10g2069 1184 Gene3D - 1072 1161 - -
Cre10g2069 1184 FunFam Polyadenylate-binding protein 1072 1158 - -
Cre10g2069 1184 SUPERFAMILY Acid proteases 75 441 IPR021109 -
Cre10g2069 1184 FunFam Aspartic proteinase-like protein 2 62 265 - -
Cre10g2069 1184 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Cre10g2069 1184 Pfam Poly-adenylate binding protein, unique domain 1081 1146 IPR002004 GO:0003723(InterPro)
Cre10g2069 1184 SUPERFAMILY PABC (PABP) domain 1071 1157 IPR036053 GO:0003723(InterPro)
Cre10g2069 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 693 770 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 Gene3D - 603 688 IPR012677 -
Cre10g2069 1184 SMART rrm1_1 797 869 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 SMART rrm1_1 694 766 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 SMART rrm1_1 515 588 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 SMART rrm1_1 603 675 IPR000504 GO:0003723(InterPro)
Cre10g2069 1184 Gene3D Acid Proteases 63 265 IPR021109 -
Cre10g2069 1184 SUPERFAMILY RNA-binding domain, RBD 687 780 IPR035979 GO:0003676(InterPro)
Cre10g2069 1184 SUPERFAMILY RNA-binding domain, RBD 514 681 IPR035979 GO:0003676(InterPro)
Cre10g2069 1184 Gene3D - 689 778 IPR012677 -
Cre10g2069 1184 SMART rrm2_1 797 869 IPR003954 GO:0003676(InterPro)
Cre10g2069 1184 SMART rrm2_1 603 675 IPR003954 GO:0003676(InterPro)
Cre10g2069 1184 SMART rrm2_1 694 766 IPR003954 GO:0003676(InterPro)
Cre10g2069 1184 Gene3D - 502 602 IPR012677 -
Cre10g2069 1184 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0666 Cre-Chr8:19651823 Cre10g2069 Cre-Chr10:35373422 2.40E-121 dispersed
Cre10g2069 Cre-Chr10:35373422 Cre11g2058 Cre-Chr11:32354963 7.20E-31 dispersed
Cre03g0509 Cre-Chr3:3629017 Cre10g2069 Cre-Chr10:35373422 1.00E-09 transposed
Cre03g1439 Cre-Chr3:27388472 Cre10g2069 Cre-Chr10:35373422 1.10E-91 transposed
Cre10g1345 Cre-Chr10:27063700 Cre10g2069 Cre-Chr10:35373422 1.70E-14 transposed
Cre11g1396 Cre-Chr11:17871270 Cre10g2069 Cre-Chr10:35373422 4.40E-88 transposed
Cre10g2069 Cre-Chr10:35373422 Cre02g2482 Cre-Chr2:38084097 1.10E-167 wgd
Cre10g2069 Cre-Chr10:35373422 Cre04g1050 Cre-Chr4:29149153 1.90E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2069 K13126 - csv:101203793 1125.92