Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g2082 | ATGAGGATCAAAACAAACTTCTTCTTTTGGCTCTATACTCTTGTCATCGTAGCTCTTTCCATCACCATTGCCCTGCGCTCATTCCCTCTTCCCTTGAATGCCATTGTCGCTGCTGTCGGTCCTCACGACGGTGCTTTTGAGCTTGGCATTTTCACTAGTCTAGTGAAAGAGAGTGGTTTGGATGAGCTTTTATCTCTTGTGATTCAATTTGTGCCCAAACACCAAAACCGATGGAAGCATAAAAAGAGTTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTTTGTACAATGTTTCACTTACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGTAGTGTGCAAAAGGCTGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCGTATCTTAATTGACTCTGGAAGCTACAGGGAGAAGGTAGTGATAGAGGCCAACAAAACAAACTTGATAATTGAAGGTCAAGGTTACCTCAACACTGCAATAGAATGGAATGACACAGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACCATCTTTGCTTCAAACTTCATTGCCTACAACATCAGCTTCAAAAACACAGCTCCTGAGGCAACTCCAGGGATAGTTGGAGGACAAGCAGTTGCAGGAGATGAAGCTGCTTTCCATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAAGGAAGACATTACTTCAAAGAATGTTTCATTCAAGGATCCATTGATTTCATCTTCGGCAATGCTCGATCGCTCTACAATGAGTGTGTTGTTTGGGGAATATGA | 813 | 42.56 | MRIKTNFFFWLYTLVIVALSITIALRSFPLPLNAIVAAVGPHDGAFELGIFTSLVKESGLDELLSLVIQFVPKHQNRWKHKKSCDEKKWNSELISLYNVSLTLTVDLKGCANFSSVQKAVDAVPDYGSSRTRILIDSGSYREKVVIEANKTNLIIEGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFIAYNISFKNTAPEATPGIVGGQAVAGDEAAFHGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYNECVVWGI | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 35497741 | 35500579 | + | CrPI670011_10g020820.1 | Cre10g2082 | 511384 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g2082 | 270 | Pfam | Pectinesterase | 104 | 267 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cre10g2082 | 270 | SUPERFAMILY | Pectin lyase-like | 99 | 267 | IPR011050 | - | |
| Cre10g2082 | 270 | ProSitePatterns | Pectinesterase signature 2. | 247 | 256 | IPR033131 | - | |
| Cre10g2082 | 270 | Gene3D | - | 68 | 268 | IPR012334 | - | |
| Cre10g2082 | 270 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 76 | 267 | - | GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre09g2114 | Cre-Chr9:40129806 | Cre10g2082 | Cre-Chr10:35497741 | 7.30E-45 | dispersed | |
| Cre10g2082 | Cre-Chr10:35497741 | Cre11g1871 | Cre-Chr11:30372525 | 1.40E-19 | dispersed | |
| Cre10g2082 | Cre-Chr10:35497741 | Cre09g0131 | Cre-Chr9:1568871 | 2.00E-21 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g2082 | - | - | - | 0.0 |