Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2082 ATGAGGATCAAAACAAACTTCTTCTTTTGGCTCTATACTCTTGTCATCGTAGCTCTTTCCATCACCATTGCCCTGCGCTCATTCCCTCTTCCCTTGAATGCCATTGTCGCTGCTGTCGGTCCTCACGACGGTGCTTTTGAGCTTGGCATTTTCACTAGTCTAGTGAAAGAGAGTGGTTTGGATGAGCTTTTATCTCTTGTGATTCAATTTGTGCCCAAACACCAAAACCGATGGAAGCATAAAAAGAGTTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTTTGTACAATGTTTCACTTACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGTAGTGTGCAAAAGGCTGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCGTATCTTAATTGACTCTGGAAGCTACAGGGAGAAGGTAGTGATAGAGGCCAACAAAACAAACTTGATAATTGAAGGTCAAGGTTACCTCAACACTGCAATAGAATGGAATGACACAGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACCATCTTTGCTTCAAACTTCATTGCCTACAACATCAGCTTCAAAAACACAGCTCCTGAGGCAACTCCAGGGATAGTTGGAGGACAAGCAGTTGCAGGAGATGAAGCTGCTTTCCATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAAGGAAGACATTACTTCAAAGAATGTTTCATTCAAGGATCCATTGATTTCATCTTCGGCAATGCTCGATCGCTCTACAATGAGTGTGTTGTTTGGGGAATATGA 813 42.56 MRIKTNFFFWLYTLVIVALSITIALRSFPLPLNAIVAAVGPHDGAFELGIFTSLVKESGLDELLSLVIQFVPKHQNRWKHKKSCDEKKWNSELISLYNVSLTLTVDLKGCANFSSVQKAVDAVPDYGSSRTRILIDSGSYREKVVIEANKTNLIIEGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFIAYNISFKNTAPEATPGIVGGQAVAGDEAAFHGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYNECVVWGI 270
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 35497741 35500579 + CrPI670011_10g020820.1 Cre10g2082 511384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2082 270 Pfam Pectinesterase 104 267 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre10g2082 270 SUPERFAMILY Pectin lyase-like 99 267 IPR011050 -
Cre10g2082 270 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Cre10g2082 270 Gene3D - 68 268 IPR012334 -
Cre10g2082 270 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 267 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2114 Cre-Chr9:40129806 Cre10g2082 Cre-Chr10:35497741 7.30E-45 dispersed
Cre10g2082 Cre-Chr10:35497741 Cre11g1871 Cre-Chr11:30372525 1.40E-19 dispersed
Cre10g2082 Cre-Chr10:35497741 Cre09g0131 Cre-Chr9:1568871 2.00E-21 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2082 - - - 0.0