Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2103 ATGAAATGGGCCTTGGCCCAAATTTGTCCTTCAAATTTCAGACCGTACAGAACTTTCACTTCGGCGATTCGCTTAGATAAACAGAGAAAGGGGGTTTTAGGTCCCCGGAAGGACGAAGAAGCATTATCAGTCGGAAATCGGGATCCGGTAAAGAAGCAACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCGGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGGAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAACAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCAACTCCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAACGGAACAGTGCCATCTGCTGCACCACCAAGGCCATTGCCGCCGCCACCACAAGCTCCACCACCGCCACCACCTCCAACACAGCAAGGAGCACCACCAAGAGTCCCTCCCCCTCCGATGCCTGGGTCCTTGCCACCTCCCCCTTCTGTAATGGCCAATGGTCCTAGGCCAATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCGCCACCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATCGACCTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCGCCACCACCACCCAATATGGGCTAG 1200 51.33 MKWALAQICPSNFRPYRTFTSAIRLDKQRKGVLGPRKDEEALSVGNRDPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSAAPPRPLPPPPQAPPPPPPPTQQGAPPRVPPPPMPGSLPPPPSVMANGPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35647119 35650150 - CrPI670011_10g021030.1 Cre10g2103 511405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2103 399 MobiDBLite consensus disorder prediction 30 80 - -
Cre10g2103 399 SMART CactinC_cactus_3 148 275 - -
Cre10g2103 399 MobiDBLite consensus disorder prediction 30 61 - -
Cre10g2103 399 MobiDBLite consensus disorder prediction 371 399 - -
Cre10g2103 399 MobiDBLite consensus disorder prediction 274 399 - -
Cre10g2103 399 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 169 263 IPR031781 -
Cre10g2103 399 PRINTS Proline rich extensin signature 295 311 - -
Cre10g2103 399 PRINTS Proline rich extensin signature 333 358 - -
Cre10g2103 399 PRINTS Proline rich extensin signature 314 331 - -
Cre10g2103 399 PRINTS Proline rich extensin signature 274 295 - -
Cre10g2103 399 Pfam Zinc-finger of C2H2 type 111 135 IPR013087 -
Cre10g2103 399 Gene3D - 152 278 - -
Cre10g2103 399 ProSiteProfiles Zinc finger matrin-type profile. 111 141 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Cre10g2103 399 MobiDBLite consensus disorder prediction 276 360 - -
Cre10g2103 399 Gene3D Classic Zinc Finger 105 148 - -
Cre10g2103 399 PANTHER SPLICING FACTOR 3A SUBUNIT 2 60 396 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Cre10g2103 399 FunFam Splicing factor 3a subunit 2 153 277 - -
Cre10g2103 399 SMART ZnF_U1_5 108 142 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre10g2103 399 SUPERFAMILY beta-beta-alpha zinc fingers 107 142 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2103 K12826 - csv:101202831 465.692