Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2107 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATATTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCCACCAGCCCTGCCGGCCTCATCAGCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAACATCTCCGGCGGCCACCTCAACCCTGCCGTCACTTTCGGCGCCTTTGTCGGCGGAAACATCACTCTCCTCCGCGGGATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCTATTACGGGATTCTTGCCTACAGCAGGAGTGGGAGTATGGGAAGCATTTGTATTCGAGATCGCAATGACATTCGGATTAGTCTACACAGTATACGCCACCGCCATTGATCCCAAGAGAGGTGAGTTGGGAGTAATAGCACCCATTGCCATCGGATTAATTGTGGCGGCCAACATTCTGGTGGGTGGCCCATTCACGGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCCTGGTGTCTTGGTCTTGGGGTGACCATTGGATCTACTGGGCTGGCCCACTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAGCTCTTCTTCATTGGGTTCACCCACCAGCCCTTGCCCGCTGCAGAGTACTGA 762 57.61 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPAGLISASLAHGFALFVGVSTAANISGGHLNPAVTFGAFVGGNITLLRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGVWEAFVFEIAMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPALVSWSWGDHWIYWAGPLIGGGLAGIVYELFFIGFTHQPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35677890 35679956 + CrPI670011_10g021070.1 Cre10g2107 511409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2107 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2107 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Cre10g2107 253 FunFam Probable aquaporin TIP1-1 6 253 - -
Cre10g2107 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cre10g2107 253 PANTHER AQUAPORIN-8 5 245 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cre10g2107 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0456 Cre-Chr1:3882330 Cre10g2107 Cre-Chr10:35677890 2.10E-84 dispersed
Cre01g1353 Cre-Chr1:26723823 Cre10g2107 Cre-Chr10:35677890 6.30E-74 dispersed
Cre09g2106 Cre-Chr9:40055183 Cre10g2107 Cre-Chr10:35677890 3.20E-74 dispersed
Cre10g2107 Cre-Chr10:35677890 Cre10g2147 Cre-Chr10:36030815 6.10E-28 dispersed
Cre10g2107 Cre-Chr10:35677890 Cre04g1037 Cre-Chr4:28958360 3.70E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2107 K09873 - csv:101222386 457.603