Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2123 ATGGCGATCCCGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAATACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTCGCGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCAATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGATGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGTGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATAGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAATGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCGATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGACACAAGTCCGTGCCAAGATGTAAATGTCAAAATGTTGACGGAGGAGAGTTGGCCGAAATGGGCACTAAATACTTTTCAAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAGTCGTGAGCACCAGCTTGAAGGTTCCAGATCCAAGAGATCGTTAA 1710 44.97 MAIPLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQIQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFAELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGMVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESTLSGATGSLVSGVEVQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPDSSIKEEDVKNFIAGQVAPYKRLKRHKSVPRCKCQNVDGGELAEMGTKYFSRDLLQITSMAIEVVSTSLKVPDPRDR 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35815935 35821360 + CrPI670011_10g021230.1 Cre10g2123 511425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2123 569 Pfam AMP-binding enzyme 39 405 IPR000873 -
Cre10g2123 569 Gene3D - 13 442 IPR042099 -
Cre10g2123 569 Pfam AMP-binding enzyme C-terminal domain 456 522 IPR025110 -
Cre10g2123 569 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
Cre10g2123 569 SUPERFAMILY Acetyl-CoA synthetase-like 18 520 - -
Cre10g2123 569 CDD 4CL 25 517 - -
Cre10g2123 569 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cre10g2123 569 Gene3D - 443 539 IPR045851 -
Cre10g2123 569 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 521 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0588 Cre-Chr3:4659825 Cre10g2123 Cre-Chr10:35815935 7.30E-180 dispersed
Cre07g0581 Cre-Chr7:3575989 Cre10g2123 Cre-Chr10:35815935 3.90E-99 dispersed
Cre09g2237 Cre-Chr9:41532277 Cre10g2123 Cre-Chr10:35815935 4.40E-49 dispersed
Cre09g2322 Cre-Chr9:42470459 Cre10g2123 Cre-Chr10:35815935 1.40E-23 dispersed
Cre10g2123 Cre-Chr10:35815935 Cre11g1688 Cre-Chr11:28275371 3.10E-96 dispersed
Cre10g2123 Cre-Chr10:35815935 Cre10g1429 Cre-Chr10:27987157 5.80E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2123 K01904 - csv:101204417 942.184