Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2124 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATAACCAACAACCCATCGGCTCCAACAGCGAAAAACACAGACCCTGAAGACCTCAGACCCACAGGAGAGGCTCAAGACGGAACTGGCAGAGCTACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATCGGGTCAGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGATATTCAGTATTTTGATACAGAGGTTCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGCTTCGTCGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATAGTTCAAATTCGAGTGGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCACAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTTACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCTGGCAAGAGCACCGTTGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCACTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCAGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTTGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTTCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGTGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATCGTCAGACTATTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCCGCCACTTTGGCAAATGCTCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTTGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCGCTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGAGAGGATGAGGAGAGAGAGAGCTAG 4080 46.79 MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAPTAKNTDPEDLRPTGEAQDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES 1359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 35840639 35846599 + CrPI670011_10g021240.1 Cre10g2124 511426
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2124 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 676 IPR027417 -
Cre10g2124 1359 FunFam ABC transporter B family member 1 427 677 - -
Cre10g2124 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1328 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre10g2124 1359 CDD ABC_6TM_Pgp_ABCB1_D2_like 759 1074 - -
Cre10g2124 1359 ProSitePatterns ABC transporters family signature. 576 590 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre10g2124 1359 CDD ABC_MTABC3_MDL1_MDL2 437 676 - -
Cre10g2124 1359 Gene3D - 1081 1332 IPR027417 -
Cre10g2124 1359 Gene3D - 427 677 IPR027417 -
Cre10g2124 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 673 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre10g2124 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1056 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre10g2124 1359 FunFam ABC transporter B family member 1 1082 1332 - -
Cre10g2124 1359 MobiDBLite consensus disorder prediction 22 91 - -
Cre10g2124 1359 Pfam ABC transporter transmembrane region 115 386 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre10g2124 1359 Pfam ABC transporter transmembrane region 771 1039 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre10g2124 1359 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre10g2124 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 402 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre10g2124 1359 MobiDBLite consensus disorder prediction 1339 1359 - -
Cre10g2124 1359 FunFam ABC transporter B family member 1 748 1057 - -
Cre10g2124 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1331 IPR027417 -
Cre10g2124 1359 Gene3D ABC transporter type 1, transmembrane domain 991 1335 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre10g2124 1359 Pfam ABC transporter 455 604 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre10g2124 1359 PANTHER ABC TRANSPORTER B FAMILY 68 701 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cre10g2124 1359 MobiDBLite consensus disorder prediction 71 85 - -
Cre10g2124 1359 FunFam ABC transporter B family member 19 1058 1080 - -
Cre10g2124 1359 CDD ABC_6TM_Pgp_ABCB1_D1_like 113 400 - -
Cre10g2124 1359 Gene3D ABC transporter type 1, transmembrane domain 735 932 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre10g2124 1359 FunFam ABC transporter B family member 1 100 435 - -
Cre10g2124 1359 CDD ABC_MTABC3_MDL1_MDL2 1092 1331 - -
Cre10g2124 1359 Pfam ABC transporter 1111 1259 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre10g2124 1359 SUPERFAMILY ABC transporter transmembrane region 756 1078 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre10g2124 1359 Gene3D ABC transporter type 1, transmembrane domain 100 689 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre10g2124 1359 SMART AAA_5 464 650 IPR003593 GO:0016887(InterPro)
Cre10g2124 1359 SMART AAA_5 1119 1311 IPR003593 GO:0016887(InterPro)
Cre10g2124 1359 SUPERFAMILY ABC transporter transmembrane region 101 415 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1638 Cre-Chr5:26847419 Cre10g2124 Cre-Chr10:35840639 4.40E-281 dispersed
Cre05g2773 Cre-Chr5:38513146 Cre10g2124 Cre-Chr10:35840639 3.30E-283 dispersed
Cre09g0109 Cre-Chr9:1348595 Cre10g2124 Cre-Chr10:35840639 5.40E-245 dispersed
Cre10g2124 Cre-Chr10:35840639 Cre10g1917 Cre-Chr10:33817132 3.20E-14 dispersed
Cre01g0454 Cre-Chr1:3868118 Cre10g2124 Cre-Chr10:35840639 9.10E-278 transposed
Cre01g0628 Cre-Chr1:5662228 Cre10g2124 Cre-Chr10:35840639 0.00E+00 transposed
Cre01g1503 Cre-Chr1:28275049 Cre10g2124 Cre-Chr10:35840639 4.00E-89 transposed
Cre02g0376 Cre-Chr2:939256 Cre10g2124 Cre-Chr10:35840639 8.00E-17 transposed
Cre02g2196 Cre-Chr2:35628427 Cre10g2124 Cre-Chr10:35840639 1.10E-09 transposed
Cre04g2028 Cre-Chr4:37575016 Cre10g2124 Cre-Chr10:35840639 5.60E-292 transposed
Cre05g1720 Cre-Chr5:28913916 Cre10g2124 Cre-Chr10:35840639 0.00E+00 transposed
Cre09g1119 Cre-Chr9:11879531 Cre10g2124 Cre-Chr10:35840639 0.00E+00 transposed
Cre10g2005 Cre-Chr10:34721903 Cre10g2124 Cre-Chr10:35840639 6.00E-55 transposed
Cre11g1524 Cre-Chr11:23942373 Cre10g2124 Cre-Chr10:35840639 4.20E-282 transposed
Cre11g1754 Cre-Chr11:29185933 Cre10g2124 Cre-Chr10:35840639 1.80E-293 transposed
Cre10g2124 Cre-Chr10:35840639 Cre02g2454 Cre-Chr2:37868914 1.30E-07 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2124 K05658 - csv:101220974 2462.18