Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g2124 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATAACCAACAACCCATCGGCTCCAACAGCGAAAAACACAGACCCTGAAGACCTCAGACCCACAGGAGAGGCTCAAGACGGAACTGGCAGAGCTACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATCGGGTCAGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGATATTCAGTATTTTGATACAGAGGTTCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGCTTCGTCGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATAGTTCAAATTCGAGTGGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCACAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTTACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCTGGCAAGAGCACCGTTGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCACTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCAGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTTGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTTCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGTGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATCGTCAGACTATTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCCGCCACTTTGGCAAATGCTCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTTGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCGCTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGAGAGGATGAGGAGAGAGAGAGCTAG | 4080 | 46.79 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAPTAKNTDPEDLRPTGEAQDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES | 1359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 35840639 | 35846599 | + | CrPI670011_10g021240.1 | Cre10g2124 | 511426 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g2124 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 428 | 676 | IPR027417 | - | |
| Cre10g2124 | 1359 | FunFam | ABC transporter B family member 1 | 427 | 677 | - | - | |
| Cre10g2124 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1328 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 759 | 1074 | - | - | |
| Cre10g2124 | 1359 | ProSitePatterns | ABC transporters family signature. | 576 | 590 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 437 | 676 | - | - | |
| Cre10g2124 | 1359 | Gene3D | - | 1081 | 1332 | IPR027417 | - | |
| Cre10g2124 | 1359 | Gene3D | - | 427 | 677 | IPR027417 | - | |
| Cre10g2124 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 437 | 673 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 769 | 1056 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cre10g2124 | 1359 | FunFam | ABC transporter B family member 1 | 1082 | 1332 | - | - | |
| Cre10g2124 | 1359 | MobiDBLite | consensus disorder prediction | 22 | 91 | - | - | |
| Cre10g2124 | 1359 | Pfam | ABC transporter transmembrane region | 115 | 386 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cre10g2124 | 1359 | Pfam | ABC transporter transmembrane region | 771 | 1039 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cre10g2124 | 1359 | ProSitePatterns | ABC transporters family signature. | 1231 | 1245 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 114 | 402 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cre10g2124 | 1359 | MobiDBLite | consensus disorder prediction | 1339 | 1359 | - | - | |
| Cre10g2124 | 1359 | FunFam | ABC transporter B family member 1 | 748 | 1057 | - | - | |
| Cre10g2124 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1331 | IPR027417 | - | |
| Cre10g2124 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 991 | 1335 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cre10g2124 | 1359 | Pfam | ABC transporter | 455 | 604 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | PANTHER | ABC TRANSPORTER B FAMILY | 68 | 701 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cre10g2124 | 1359 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
| Cre10g2124 | 1359 | FunFam | ABC transporter B family member 19 | 1058 | 1080 | - | - | |
| Cre10g2124 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 113 | 400 | - | - | |
| Cre10g2124 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 735 | 932 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cre10g2124 | 1359 | FunFam | ABC transporter B family member 1 | 100 | 435 | - | - | |
| Cre10g2124 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 1092 | 1331 | - | - | |
| Cre10g2124 | 1359 | Pfam | ABC transporter | 1111 | 1259 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 756 | 1078 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cre10g2124 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 100 | 689 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cre10g2124 | 1359 | SMART | AAA_5 | 464 | 650 | IPR003593 | GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | SMART | AAA_5 | 1119 | 1311 | IPR003593 | GO:0016887(InterPro) | |
| Cre10g2124 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 415 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g1638 | Cre-Chr5:26847419 | Cre10g2124 | Cre-Chr10:35840639 | 4.40E-281 | dispersed | |
| Cre05g2773 | Cre-Chr5:38513146 | Cre10g2124 | Cre-Chr10:35840639 | 3.30E-283 | dispersed | |
| Cre09g0109 | Cre-Chr9:1348595 | Cre10g2124 | Cre-Chr10:35840639 | 5.40E-245 | dispersed | |
| Cre10g2124 | Cre-Chr10:35840639 | Cre10g1917 | Cre-Chr10:33817132 | 3.20E-14 | dispersed | |
| Cre01g0454 | Cre-Chr1:3868118 | Cre10g2124 | Cre-Chr10:35840639 | 9.10E-278 | transposed | |
| Cre01g0628 | Cre-Chr1:5662228 | Cre10g2124 | Cre-Chr10:35840639 | 0.00E+00 | transposed | |
| Cre01g1503 | Cre-Chr1:28275049 | Cre10g2124 | Cre-Chr10:35840639 | 4.00E-89 | transposed | |
| Cre02g0376 | Cre-Chr2:939256 | Cre10g2124 | Cre-Chr10:35840639 | 8.00E-17 | transposed | |
| Cre02g2196 | Cre-Chr2:35628427 | Cre10g2124 | Cre-Chr10:35840639 | 1.10E-09 | transposed | |
| Cre04g2028 | Cre-Chr4:37575016 | Cre10g2124 | Cre-Chr10:35840639 | 5.60E-292 | transposed | |
| Cre05g1720 | Cre-Chr5:28913916 | Cre10g2124 | Cre-Chr10:35840639 | 0.00E+00 | transposed | |
| Cre09g1119 | Cre-Chr9:11879531 | Cre10g2124 | Cre-Chr10:35840639 | 0.00E+00 | transposed | |
| Cre10g2005 | Cre-Chr10:34721903 | Cre10g2124 | Cre-Chr10:35840639 | 6.00E-55 | transposed | |
| Cre11g1524 | Cre-Chr11:23942373 | Cre10g2124 | Cre-Chr10:35840639 | 4.20E-282 | transposed | |
| Cre11g1754 | Cre-Chr11:29185933 | Cre10g2124 | Cre-Chr10:35840639 | 1.80E-293 | transposed | |
| Cre10g2124 | Cre-Chr10:35840639 | Cre02g2454 | Cre-Chr2:37868914 | 1.30E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g2124 | K05658 | - | csv:101220974 | 2462.18 |