Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2147 ATGGCGAACAACGACATCGAAATCGGAGGTCGGGGAGCGGCGTCGAGGAAGGACTATTTGGACCCGCTTCCGGCGCCGATGATCGACATGGAGGAGTTTACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTATACGTCGCCGTTTTGACGGTGATCGGAAATAAAAGCCAGATGGACCCGCTGAACGGCGGGAATGTCTGCGGCGGAGTTGGCCCCGTCGGAATCTCGTGGGTCTTCGGCGGAATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTCGGAATGTTTATGGCAAGAAAGATATCGCTGGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACACTCCAAAGGGATCGCTACAACCACTACGGCGGTGGCGCGAACCAGCTTGTCGATGGTTACAGCCGAGGCACCGGCCTTGCCGTCGAGATTATGGGCACCTTTGTTCTTCTCTACACCGTCTTCTCCGCCACTGATCCTAAACGTAATGCCAGAGACTCCCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTCGCTGTCTTCATGGTTCACCTCGCTACGATTCCCGTCACCGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTGCCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCGCTGATCGGAGCAACCATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTCAGAAGCTCGCCGCCAACTCGCTATTAA 873 54.07 MANNDIEIGGRGAASRKDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAVLTVIGNKSQMDPLNGGNVCGGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFMARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDRKVWKDHWIFWVGPLIGATIAAMYYQYVLRASAVKAIGSFRSSPPTRY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36030815 36033790 + CrPI670011_10g021470.1 Cre10g2147 511449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2147 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Cre10g2147 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cre10g2147 290 FunFam Probable aquaporin PIP1-2 25 286 - -
Cre10g2147 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2147 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Cre10g2147 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0993 Cre-Chr4:28506674 Cre10g2147 Cre-Chr10:36030815 1.70E-113 dispersed
Cre10g2107 Cre-Chr10:35677890 Cre10g2147 Cre-Chr10:36030815 6.10E-28 dispersed
Cre10g2147 Cre-Chr10:36030815 Cre10g2298 Cre-Chr10:37239567 6.60E-95 dispersed
Cre10g2147 Cre-Chr10:36030815 Cre02g2421 Cre-Chr2:37558276 1.60E-120 wgd
Cre10g2147 Cre-Chr10:36030815 Cre04g0988 Cre-Chr4:28472818 1.40E-76 wgd
Cre10g2147 Cre-Chr10:36030815 Cre05g2278 Cre-Chr5:34358408 1.00E-116 wgd
Cre10g2147 Cre-Chr10:36030815 Cre08g0699 Cre-Chr8:19992402 2.50E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2147 K09872 - csv:101214142 551.977