Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2148 ATGGTTTCTGATCGGGATGCCTTATTGCTGAAGTTCATCCCTTCTTTACTTGTTTACTCTTTACAAGGATTAATTCTCCTTTTGCAGGAGAATATGGCAACTAGAGGTCAAGGTGGTATCCAACAATTGCTTGCTGCGGAGCAAGAAGCACAACACATCGTCAATGCTGCCAGAAATGCAAAAATGGCTAGACTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCTGCATATCGCGCCCAAGTCGAGTCTGAATTCCAAAGAAAACTTGCTGAGAGTAGTGGAGATTCAGGAGCTAATGTTAAGCGGCTTGAGATCGAGACAGATGAAAAGATTTATCACCTGAAAGAAGAGTCTGCGAGAATTTCACACGACGTTGTGAACATGCTTCTGAAGCACGTGACAACCGTGAAAAATTGA 423 42.79 MVSDRDALLLKFIPSLLVYSLQGLILLLQENMATRGQGGIQQLLAAEQEAQHIVNAARNAKMARLKQAKEEAEKEIAAYRAQVESEFQRKLAESSGDSGANVKRLEIETDEKIYHLKEESARISHDVVNMLLKHVTTVKN 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36036397 36037231 + CrPI670011_10g021480.1 Cre10g2148 511450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2148 140 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 34 140 IPR005124 GO:0016471(InterPro)|GO:0016471(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre10g2148 140 Gene3D - 30 140 - -
Cre10g2148 140 Pfam Vacuolar (H+)-ATPase G subunit 37 139 IPR005124 GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre10g2148 140 NCBIfam V-type ATPase subunit G 32 139 IPR005124 GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre10g2148 140 FunFam V-type proton ATPase subunit G 33 140 - -
Cre10g2148 140 Coils Coil 55 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2148 K02152 - - csv:101216393 180.644
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1609 Cre-Chr8:28557465 Cre10g2148 Cre-Chr10:36036397 5.60E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g572 . . . . . Bpe03g01286 . Bma10g00027 Cmo06g00370 Cmo14g00199 . . . . . . Cpe08g01100 . . . . . . . . . . . . . . . . . . . . . Cme04g02533 Blo07g01401 . . Bda05g01231 . . . . . . . Cma06g00375 Cma14g00208 Car06g00324 Car14g00185 Cpe03g00178 . . . . . . . . Cla10g01933 Cam10g1999 Cec10g2040 Cco10g2018 Clacu10g2006 Cmu10g2755 Cre10g2148 Lsi03g02029 Csa03g03270 Chy04g02070 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre02g0838 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.0
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT2G21410 71.3 0.0e+00 1147.1
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT2G21410 60.7 1.8e-294 1008.8
Cre02g0838 . 1 818 Primary Pumps ATPases(2) AT4G39080 76.4 0.0e+00 1235.3
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1151.3
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT4G39080 61.6 2.0e-293 1005.4
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1397 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre08g1398 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre11g1987 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.4e-66 248.4
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.9e-53 203.8
Cre08g1397 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1398 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre05g1876 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.0e-70 262.7
Cre08g1242 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.4e-70 261.9
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre05g1876 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 5.2e-73 271.2
Cre08g1242 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.7e-71 266.2
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1671.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.0
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre03g0492 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1319.7
Cre03g2001 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.1e-57 217.6
Cre02g0748 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 3.7e-268 920.6
Cre10g2148 . 33 140 Primary Pumps ATPases(2) AT3G01390 80.6 4.1e-37 151.0
Cre09g1721 . 237 612 Primary Pumps ATPases(2) AT1G12840 83.5 1.2e-181 632.9
Cre01g0259 . 1010 1227 Primary Pumps ATPases(2) AT3G58730 86.7 2.0e-103 372.5
Cre10g1759 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.2e-206 715.3
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre02g0748 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.4e-270 927.9
Cre05g1625 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.8 5.6e-66 247.7
Cre02g0748 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 7.8e-266 912.9
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28715 92.7 3.0e-187 651.4
Cre05g1625 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.9e-91 330.5
Cre09g0154 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cre02g0748 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 3.7e-268 920.6
Cre02g0748 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.4e-270 927.9
Cre02g0748 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 7.8e-266 912.9
Cre09g1721 . 237 612 Primary Pumps ATPases(2) AT1G12840 83.5 1.2e-181 632.9
Cre01g0259 . 1010 1227 Primary Pumps ATPases(2) AT3G58730 86.7 2.0e-103 372.5
Cre05g1625 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.9e-91 330.5
Cre05g1625 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 3.3e-76 282.0
Cre05g1625 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.8 5.6e-66 247.7
Cre03g2001 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.1e-57 217.6
Cre10g2148 . 33 140 Primary Pumps ATPases(2) AT3G01390 80.6 4.1e-37 151.0
Cre10g1759 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.2e-206 715.3
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre02g0838 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.0
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT2G21410 71.3 0.0e+00 1147.1
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT2G21410 60.7 1.8e-294 1008.8
Cre02g0838 . 1 818 Primary Pumps ATPases(2) AT4G39080 76.4 0.0e+00 1235.3
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1151.3
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT4G39080 61.6 2.0e-293 1005.4
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.9e-53 203.8
Cre08g1397 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1398 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1397 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre08g1398 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre11g1987 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.4e-66 248.4
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre05g1876 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 5.2e-73 271.2
Cre08g1242 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.7e-71 266.2
Cre05g1876 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.0e-70 262.7
Cre08g1242 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.4e-70 261.9
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28710 95.0 2.6e-194 674.9
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28715 92.7 3.0e-187 651.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1671.4
Cre03g0492 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1319.7
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001804 2 5 1 1 0 2 3 2 1 2 0 2 1 2 2 2 2 2 3 2 2 3 1 2 2 0 2 2 8 3 62