Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2152 ATGTCAAGTAATCCCTTTTCCCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGATGATGCTAACCCTAACCCTAACCCTAACCCTAACACTAAACCCAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCACCAAAATCACTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGACGTGCGTACACCACGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTAATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCGGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCATCGGCAGCGGCACTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAACAATTCCGCGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCGTCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGGTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCGAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1494 44.31 MSSNPFSLLSSTTTAAFAHQHDDANPNPNPNPNTKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSNSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSALFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNGNNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFAANH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36064706 36067009 - CrPI670011_10g021520.1 Cre10g2152 511454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2152 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 466 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre10g2152 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Cre10g2152 497 Gene3D Classic Zinc Finger 51 123 - -
Cre10g2152 497 Gene3D Classic Zinc Finger 124 206 - -
Cre10g2152 497 SMART c2h2final6 149 169 IPR013087 -
Cre10g2152 497 SMART c2h2final6 72 94 IPR013087 -
Cre10g2152 497 SMART c2h2final6 114 144 IPR013087 -
Cre10g2152 497 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 148 172 - -
Cre10g2152 497 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Cre10g2152 497 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 175 214 - -
Cre10g2152 497 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 110 144 - -
Cre10g2152 497 FunFam protein indeterminate-domain 12-like 51 120 - -
Cre10g2152 497 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Cre10g2152 497 MobiDBLite consensus disorder prediction 1 55 - -
Cre10g2152 497 MobiDBLite consensus disorder prediction 1 28 - -
Cre10g2152 497 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Cre10g2152 497 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0539 Cre-Chr3:4045656 Cre10g2152 Cre-Chr10:36064706 9.70E-87 dispersed
Cre09g0064 Cre-Chr9:901632 Cre10g2152 Cre-Chr10:36064706 2.40E-87 dispersed
Cre09g0582 Cre-Chr9:5495427 Cre10g2152 Cre-Chr10:36064706 5.40E-81 dispersed
Cre09g0697 Cre-Chr9:6684159 Cre10g2152 Cre-Chr10:36064706 4.10E-84 dispersed
Cre09g1848 Cre-Chr9:36885334 Cre10g2152 Cre-Chr10:36064706 1.60E-59 dispersed
Cre10g2152 Cre-Chr10:36064706 Cre11g0573 Cre-Chr11:2839629 3.70E-85 dispersed
Cre10g2152 Cre-Chr10:36064706 Cre04g0982 Cre-Chr4:28428145 5.80E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54612 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2152 K25870 - csv:101213422 759.599