Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g2153 | ATGGGTCATTACACTTGCTGCGAAGCAAGTTTAGTTATAAGATATATTCGGACATCACAAGCGCACGACTTCTGTAGATATTCACGGAACCACTTTTACTGCCGTACGTCACCGGAAAACCTACCGGGGCGCGGAGGCGAAGAATCAAAGATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCAACCGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACCAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA | 948 | 45.68 | MGHYTCCEASLVIRYIRTSQAHDFCRYSRNHFYCRTSPENLPGRGGEESKMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36078053 | 36081109 | - | CrPI670011_10g021530.1 | Cre10g2153 | 511455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g2153 | 315 | Coils | Coil | 269 | 289 | - | - | |
Cre10g2153 | 315 | ProSitePatterns | Syntaxin / epimorphin family signature. | 226 | 265 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cre10g2153 | 315 | Coils | Coil | 90 | 110 | - | - | |
Cre10g2153 | 315 | Pfam | SNARE domain | 257 | 306 | IPR000727 | - | |
Cre10g2153 | 315 | SMART | tSNARE_6 | 215 | 282 | IPR000727 | - | |
Cre10g2153 | 315 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 220 | 282 | IPR000727 | - | |
Cre10g2153 | 315 | PANTHER | SYNTAXIN | 93 | 300 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cre10g2153 | 315 | FunFam | Putative syntaxin-71-like | 220 | 281 | - | - | |
Cre10g2153 | 315 | SUPERFAMILY | SNARE fusion complex | 213 | 280 | - | - | |
Cre10g2153 | 315 | CDD | SNARE_Qc | 225 | 280 | - | - | |
Cre10g2153 | 315 | Gene3D | - | 220 | 281 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g2153 | Cre-Chr10:36078053 | Cre02g2412 | Cre-Chr2:37509939 | 3.30E-100 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g2153 | K08506 | - | csv:101215905 | 496.508 |