Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2153 ATGGGTCATTACACTTGCTGCGAAGCAAGTTTAGTTATAAGATATATTCGGACATCACAAGCGCACGACTTCTGTAGATATTCACGGAACCACTTTTACTGCCGTACGTCACCGGAAAACCTACCGGGGCGCGGAGGCGAAGAATCAAAGATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCAACCGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACCAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 948 45.68 MGHYTCCEASLVIRYIRTSQAHDFCRYSRNHFYCRTSPENLPGRGGEESKMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36078053 36081109 - CrPI670011_10g021530.1 Cre10g2153 511455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2153 315 Coils Coil 269 289 - -
Cre10g2153 315 ProSitePatterns Syntaxin / epimorphin family signature. 226 265 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre10g2153 315 Coils Coil 90 110 - -
Cre10g2153 315 Pfam SNARE domain 257 306 IPR000727 -
Cre10g2153 315 SMART tSNARE_6 215 282 IPR000727 -
Cre10g2153 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 220 282 IPR000727 -
Cre10g2153 315 PANTHER SYNTAXIN 93 300 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre10g2153 315 FunFam Putative syntaxin-71-like 220 281 - -
Cre10g2153 315 SUPERFAMILY SNARE fusion complex 213 280 - -
Cre10g2153 315 CDD SNARE_Qc 225 280 - -
Cre10g2153 315 Gene3D - 220 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g2153 Cre-Chr10:36078053 Cre02g2412 Cre-Chr2:37509939 3.30E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2153 K08506 - csv:101215905 496.508