Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2172 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGATGGCACGGTGCTTAAAGATCACGAGAAGGAGAGCAATGTTTTTCCATTTTCTTCAAGAGTAACTTGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTCTCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 774 45.61 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQDGTVLKDHEKESNVFPFSSRVTCSGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFLPHKLSYFFIVLLEFRESSVCSAKEG 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36251410 36261924 - CrPI670011_10g021720.1 Cre10g2172 511474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2172 257 MobiDBLite consensus disorder prediction 117 139 - -
Cre10g2172 257 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 159 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cre10g2172 257 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cre10g2172 257 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cre10g2172 257 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cre10g2172 257 SUPERFAMILY Histone-fold 27 125 IPR009072 GO:0046982(InterPro)
Cre10g2172 257 Gene3D Histone, subunit A 17 163 IPR009072 GO:0046982(InterPro)
Cre10g2172 257 MobiDBLite consensus disorder prediction 1 28 - -
Cre10g2172 257 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Cre10g2172 257 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cre10g2172 257 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1245 Cre-Chr2:13198053 Cre10g2172 Cre-Chr10:36251410 2.40E-43 transposed
Cre07g1297 Cre-Chr7:27235767 Cre10g2172 Cre-Chr10:36251410 1.90E-41 transposed
Cre10g0657 Cre-Chr10:6228589 Cre10g2172 Cre-Chr10:36251410 6.00E-43 transposed
Cre10g0675 Cre-Chr10:6392425 Cre10g2172 Cre-Chr10:36251410 1.20E-33 transposed
Cre10g2172 Cre-Chr10:36251410 Cre02g1703 Cre-Chr2:30118535 1.00E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54613 PF00808 CBFD_NFYB_HMF 1.70E-27 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2172 K08065 - csv:101212699 328.176