Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2174 ATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCACCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCTAGGGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAGTCTTTCTGATGTCCGAAGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATCATTGTTGACAGAAGAGCTATGCCTGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGACTGGCAAATCCATGGCCACCCGAGTGAAACCTCTGTTCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCGGCAATCTTCTACTGGCCTGTCCCTACGCCACTTAAGGCTCATCTCCGCCCGCCTTGCCGGCCTCCGCCGTCACCTCCGCCTGCACCCTACCGATCTATCTTCTCCTTATCGAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAAGTTGAAGATGAACAGTCCGATCATCAAAAGATAA 1587 48.52 MLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDHRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPSLSDVRSESIGMFGNGIHHSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWDWQIHGHPSETSVPLFSAAASSGFPSSSSSSTVISSASPAVGEIHFPAIFYWPVPTPLKAHLRPPCRPPPSPPPAPYRSIFSLSNEVPIVLSETKKLKMNSPIIKR 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36291159 36299366 - CrPI670011_10g021740.1 Cre10g2174 511476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2174 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 345 - -
Cre10g2174 528 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 MobiDBLite consensus disorder prediction 37 62 - -
Cre10g2174 528 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677(InterPro)
Cre10g2174 528 Pfam AP2 domain 160 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 Pfam AP2 domain 251 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677(InterPro)
Cre10g2174 528 SMART rav1_2 252 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 SMART rav1_2 160 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 CDD AP2 159 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 CDD AP2 251 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 MobiDBLite consensus disorder prediction 135 161 - -
Cre10g2174 528 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g2174 528 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Cre10g2174 528 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1320 Cre-Chr4:32003930 Cre10g2174 Cre-Chr10:36291159 1.30E-90 dispersed
Cre10g2174 Cre-Chr10:36291159 Cre11g1355 Cre-Chr11:15777955 1.40E-42 dispersed
Cre10g2174 Cre-Chr10:36291159 Cre02g2381 Cre-Chr2:37234669 2.40E-119 wgd
Cre10g2174 Cre-Chr10:36291159 Cre02g1701 Cre-Chr2:30101729 1.20E-70 wgd
Cre10g2174 Cre-Chr10:36291159 Cre04g0972 Cre-Chr4:28342347 3.70E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54614 PF00847 AP2 1.50E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2174 K09284 - csv:101211242 839.721