Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2179 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGACGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATTTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACTACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGGGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA 1188 42.59 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYYPGTNIPHDSPGSACTPPRTNRDSDRKLNGGRRYDRNPTKRL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36331013 36333844 + CrPI670011_10g021790.1 Cre10g2179 511481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2179 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2179 395 MobiDBLite consensus disorder prediction 358 395 - -
Cre10g2179 395 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Cre10g2179 395 SMART serkin_6 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2179 395 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Cre10g2179 395 MobiDBLite consensus disorder prediction 31 50 - -
Cre10g2179 395 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2179 395 PANTHER OS07G0668900 PROTEIN 25 357 - -
Cre10g2179 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cre10g2179 395 FunFam Serine/threonine-protein kinase PBS1 148 362 - -
Cre10g2179 395 MobiDBLite consensus disorder prediction 15 51 - -
Cre10g2179 395 Gene3D Transferase(Phosphotransferase) domain 1 148 356 - -
Cre10g2179 395 MobiDBLite consensus disorder prediction 373 395 - -
Cre10g2179 395 CDD STKc_IRAK 77 345 - -
Cre10g2179 395 FunFam Serine/threonine-protein kinase PBS1 44 147 - -
Cre10g2179 395 MobiDBLite consensus disorder prediction 358 372 - -
Cre10g2179 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0524 Cre-Chr3:3834706 Cre10g2179 Cre-Chr10:36331013 3.00E-144 dispersed
Cre05g0718 Cre-Chr5:6341480 Cre10g2179 Cre-Chr10:36331013 2.20E-149 dispersed
Cre06g0954 Cre-Chr6:3014227 Cre10g2179 Cre-Chr10:36331013 2.30E-145 dispersed
Cre09g0865 Cre-Chr9:8651998 Cre10g2179 Cre-Chr10:36331013 5.30E-131 dispersed
Cre10g0763 Cre-Chr10:7436416 Cre10g2179 Cre-Chr10:36331013 2.90E-132 dispersed
Cre10g1311 Cre-Chr10:26393469 Cre10g2179 Cre-Chr10:36331013 9.70E-87 dispersed
Cre10g2179 Cre-Chr10:36331013 Cre11g2267 Cre-Chr11:34447006 2.90E-125 dispersed
Cre10g2179 Cre-Chr10:36331013 Cre02g2377 Cre-Chr2:37166934 2.90E-133 wgd
Cre10g2179 Cre-Chr10:36331013 Cre02g1692 Cre-Chr2:29975035 4.10E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64496 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2179 - - - 0.0