Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2180 ATGGCTGCTCTCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTTTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGTGCCATCTCTAGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCTAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCGTATAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGGTTGAAGAGATGATACGAATAAATTACCCAACATGTGGACGGGAATTTTTCGATGTTTGTTCTGTACTTTCTATGTATTTTGGTGTGTTTGAAGCAATTAGTTTGTATGTCGCTGCTCGCGTTCGCTTCCTCCGATTCCCTATACATACATCTCTCAATGAAGCGGCCATATATCTCATTCGAAGAACATCCATGGCGTCCCCCTACGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTACACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATTAAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAATGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATCCTGCTAAAAGAGAGTATGCCGAAGAGTTGCTATCCTACGGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAATTACTTGCCTGGATTGAGGAGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAGTTGGTCGTTGAAATTTATTCAATGCGATTCTTGGGCACAGTGGAACGTTATCAAAACCCTCCGCACCATAACGCATCTCCTGATGGGCGCTGTAACGCCGTCCATTTTCATCTTCGCGCCATGAAAATTTTTAGAGCTTTAGAGAGAGAAAGAGAGAAGGAGAGACCGAAGAAACCGATCTACCTTCTCCACCCGCTAATGGCGGAGAGGAGCATTCACATGCTCCACATTCTCGAGCCGAGAAGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAAGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCATTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAACTCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAACGTGTTGTTCAGACTTGGTGTCAAACTAGGCCATCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGCGATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGCAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCGTAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCCGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCAATTGTTTACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCAAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAATGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAGAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGTTACTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTACTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACGAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTACTTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCGGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGAGCCGATGTAGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAATCGACGACTATTAAGTGCCAGGGTTGAACAACTGGAGATAGAGGTAGCCGAGCTAAAGAAAACTCTAGCAGAGAAGAAAGAACAAGAAGTTGCAATGCTTCAGTTGTTGATGCGTGTTGAGCAAGAGCAAAGAGTAACCGAGGAAGCTAGAATAAATGCCGAGCAAGACGTAGCAGCTCAAAAATATGCTGTTCATATGCTTCAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGGAGAAAAGGGTGGTGATGGCCGAATCCATGTTGGAGGCTACATTACAATATGAATCTGGCCAAGTTAAAGCAATGTCATCTCCTGGGTCGCGTAATCAAGGATCTGCACAGGAAAATCAAAGAAAGGTTGGTTTGCTGCCATTTGCACTAGGCTGGCGAGATCGAAACAAGCTTGAATTTCTATTCTCGAATTGGGTCGACTGGCGTAGCTTAGAGGATCTTTCTTTTAGTTTTCTTCACATTAACAGAATGGAAAGGCTTTTTCTTTGGGTGAAGAACCTTAATTTCAGAGTGAAGTTCCAACAGCTAAGTGACCCGTTCAGGCACCGTCCAGTGCATTCAATCAAGCTTTTGAATCACCTATGGTACTCCTCCTCGTAG 4251 43.52 MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLVEEMIRINYPTCGREFFDVCSVLSMYFGVFEAISLYVAARVRFLRFPIHTSLNEAAIYLIRRTSMASPYVEEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIKLVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYGETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEEFNKIDAYKQTKVDPKLVVEIYSMRFLGTVERYQNPPHHNASPDGRCNAVHFHLRAMKIFRALEREREKERPKKPIYLLHPLMAERSIHMLHILEPRRDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSFQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSNSDSVDTTDSVPTKLLEPPVETQKRVVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGDHLPLLEEAESLEGTSVANSEEEEACFSGALNRSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDQLFTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLRKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVLEERTKKGRVWKDSKGLASKLYSFKHDPGSPMERKKTAAGADVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSARVEQLEIEVAELKKTLAEKKEQEVAMLQLLMRVEQEQRVTEEARINAEQDVAAQKYAVHMLQDKYEKAMASLAEMEKRVVMAESMLEATLQYESGQVKAMSSPGSRNQGSAQENQRKVGLLPFALGWRDRNKLEFLFSNWVDWRSLEDLSFSFLHINRMERLFLWVKNLNFRVKFQQLSDPFRHRPVHSIKLLNHLWYSSS 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36333897 36354870 - CrPI670011_10g021800.1 Cre10g2180 511482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2180 1416 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
Cre10g2180 1416 Gene3D - 401 530 - -
Cre10g2180 1416 Gene3D - 104 235 - -
Cre10g2180 1416 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Cre10g2180 1416 Pfam Glutathione S-transferase, N-terminal domain 326 402 IPR004045 -
Cre10g2180 1416 Gene3D - 955 1094 - -
Cre10g2180 1416 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Cre10g2180 1416 SUPERFAMILY GST C-terminal domain-like 400 527 IPR036282 -
Cre10g2180 1416 Coils Coil 1210 1265 - -
Cre10g2180 1416 CDD GST_C_Lambda 111 227 - -
Cre10g2180 1416 MobiDBLite consensus disorder prediction 772 792 - -
Cre10g2180 1416 FunFam Lambda class glutathione S-transferase 104 234 - -
Cre10g2180 1416 SUPERFAMILY Thioredoxin-like 317 404 IPR036249 -
Cre10g2180 1416 MobiDBLite consensus disorder prediction 762 806 - -
Cre10g2180 1416 SMART tbc_4 824 1048 IPR000195 -
Cre10g2180 1416 SFLD Glutathione Transferase (cytosolic) 28 208 IPR040079 -
Cre10g2180 1416 SFLD Glutathione Transferase (cytosolic) 325 503 IPR040079 -
Cre10g2180 1416 FunFam TBC1 domain family member 8B 955 1095 - -
Cre10g2180 1416 FunFam Glutathione S-transferase L2, chloroplastic 297 400 - -
Cre10g2180 1416 SFLD Main (cytGST) 28 208 - -
Cre10g2180 1416 Gene3D Glutaredoxin 297 400 - -
Cre10g2180 1416 Gene3D Glutaredoxin 1 103 - -
Cre10g2180 1416 MobiDBLite consensus disorder prediction 671 692 - -
Cre10g2180 1416 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 961 1076 IPR035969 -
Cre10g2180 1416 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 856 954 - -
Cre10g2180 1416 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 812 984 IPR035969 -
Cre10g2180 1416 SUPERFAMILY GST C-terminal domain-like 102 231 IPR036282 -
Cre10g2180 1416 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 844 954 - -
Cre10g2180 1416 Pfam Rab-GTPase-TBC domain 831 1042 IPR000195 -
Cre10g2180 1416 PANTHER GLUTATHIONE S-TRANSFERASE L1 2 241 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Cre10g2180 1416 MobiDBLite consensus disorder prediction 655 702 - -
Cre10g2180 1416 FunFam Glutathione S-transferase L2, chloroplastic 1 103 - -
Cre10g2180 1416 Coils Coil 1273 1300 - -
Cre10g2180 1416 Pfam Glutathione S-transferase, C-terminal domain 146 205 - -
Cre10g2180 1416 Pfam Glutathione S-transferase, C-terminal domain 442 501 - -
Cre10g2180 1416 ProSiteProfiles TBC/rab GAP domain profile. 827 1024 IPR000195 -
Cre10g2180 1416 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 322 403 IPR004045 -
Cre10g2180 1416 CDD GST_C_Lambda 407 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g2180 Cre-Chr10:36333897 Cre10g2181 Cre-Chr10:36357397 5.80E-19 tandem
Cre02g1284 Cre-Chr2:14384893 Cre10g2180 Cre-Chr10:36333897 8.00E-43 transposed
Cre02g1691 Cre-Chr2:29945165 Cre10g2180 Cre-Chr10:36333897 1.50E-224 transposed
Cre10g2180 Cre-Chr10:36333897 Cre02g1689 Cre-Chr2:29929566 5.30E-89 wgd
Cre10g2180 Cre-Chr10:36333897 Cre04g0990 Cre-Chr4:28480229 4.40E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2180 - - - 0.0