Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2184 ATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCCCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACCGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGGTGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTAGCGGTGGTGGAGCTGCCGTCGGTGGCGGTGGGTGGGGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAAAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACGATGTGTCCATCTGATGGAGATTAA 855 59.18 MEELEPPTVIMAALSALPPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCPSDGD 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36379796 36380650 - CrPI670011_10g021840.1 Cre10g2184 511486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2184 284 SUPERFAMILY RING/U-box 204 258 - -
Cre10g2184 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 258 IPR013083 -
Cre10g2184 284 SMART ring_2 211 251 IPR001841 -
Cre10g2184 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 183 257 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cre10g2184 284 Pfam Ring finger domain 210 252 IPR001841 -
Cre10g2184 284 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Cre10g2184 284 CDD RING-H2_PA-TM-RING 210 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g2184 Cre-Chr10:36379796 Cre10g2236 Cre-Chr10:36776956 4.70E-13 dispersed
Cre10g2184 Cre-Chr10:36379796 Cre04g0716 Cre-Chr4:25267540 5.60E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2184 - - - 0.0