Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2204 ATGCCGACACTAGTGAGTGTTGCAAGGCAATGCTTGATGAAGGAGGCGCCAAAAAGATCTCAGATCCGTAGTTCTTGGGAATTCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGCTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTTACGTCGGCTTGTTCGGGTAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCGTTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCTACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAGTCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCTGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACCGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTCGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGCCAACGTTATAA 2742 43.36 MPTLVSVARQCLMKEAPKRSQIRSSWEFNRRLCCSPLGFFLSFPFILELLSSDSSFLGFRKGVEIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCSREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQRPTL 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36531156 36540922 - CrPI670011_10g022040.1 Cre10g2204 511506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2204 913 SUPERFAMILY FYVE/PHD zinc finger 640 695 IPR011011 -
Cre10g2204 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 622 IPR013083 -
Cre10g2204 913 Pfam Tify domain binding domain 329 383 IPR032308 -
Cre10g2204 913 Pfam Tify domain binding domain 496 545 IPR032308 -
Cre10g2204 913 ProSiteProfiles Zinc finger PHD-type profile. 639 700 IPR019787 -
Cre10g2204 913 FunFam PHD finger family protein 740 907 - -
Cre10g2204 913 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 797 885 IPR016181 -
Cre10g2204 913 MobiDBLite consensus disorder prediction 92 124 - -
Cre10g2204 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 700 IPR013083 -
Cre10g2204 913 ProSiteProfiles Zinc finger PHD-type profile. 560 605 IPR019787 -
Cre10g2204 913 MobiDBLite consensus disorder prediction 165 186 - -
Cre10g2204 913 MobiDBLite consensus disorder prediction 125 151 - -
Cre10g2204 913 FunFam PHD zinc finger protein 640 700 - -
Cre10g2204 913 ProSitePatterns Zinc finger PHD-type signature. 563 602 IPR019786 -
Cre10g2204 913 MobiDBLite consensus disorder prediction 90 151 - -
Cre10g2204 913 Pfam PHD-finger 563 602 IPR019787 -
Cre10g2204 913 MobiDBLite consensus disorder prediction 228 258 - -
Cre10g2204 913 SMART PHD_3 562 603 IPR001965 -
Cre10g2204 913 SMART PHD_3 641 698 IPR001965 -
Cre10g2204 913 MobiDBLite consensus disorder prediction 242 256 - -
Cre10g2204 913 SUPERFAMILY FYVE/PHD zinc finger 558 605 IPR011011 -
Cre10g2204 913 MobiDBLite consensus disorder prediction 165 190 - -
Cre10g2204 913 ProSitePatterns Zinc finger PHD-type signature. 642 697 IPR019786 -
Cre10g2204 913 PANTHER AUTOIMMUNE REGULATOR 98 910 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cre10g2204 913 Gene3D - 744 908 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2474 Cre-Chr2:38034552 Cre10g2204 Cre-Chr10:36531156 2.00E-156 dispersed
Cre10g2081 Cre-Chr10:35486016 Cre10g2204 Cre-Chr10:36531156 3.10E-144 dispersed
Cre10g2204 Cre-Chr10:36531156 Cre07g0670 Cre-Chr7:4448468 3.20E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54617 PF16135 TDBD 5.60E-12 No_clan Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2204 - - - 0.0