Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2214 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGAGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTCCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGTGGAGAAGGACAAGGACCCGGACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1035 52.56 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAPATATGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEGQGPGPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36623748 36625223 - CrPI670011_10g022140.1 Cre10g2214 511516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2214 344 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre10g2214 344 MobiDBLite consensus disorder prediction 16 34 - -
Cre10g2214 344 MobiDBLite consensus disorder prediction 16 61 - -
Cre10g2214 344 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre10g2214 344 MobiDBLite consensus disorder prediction 122 180 - -
Cre10g2214 344 MobiDBLite consensus disorder prediction 246 314 - -
Cre10g2214 344 MobiDBLite consensus disorder prediction 35 55 - -
Cre10g2214 344 MobiDBLite consensus disorder prediction 139 174 - -
Cre10g2214 344 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre10g2214 344 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 51 - -
Cre10g2214 344 MobiDBLite consensus disorder prediction 283 314 - -
Cre10g2214 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 163 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1492 Cre-Chr8:27732026 Cre10g2214 Cre-Chr10:36623748 1.10E-24 dispersed
Cre10g0921 Cre-Chr10:11163289 Cre10g2214 Cre-Chr10:36623748 6.30E-28 dispersed
Cre10g1660 Cre-Chr10:30808945 Cre10g2214 Cre-Chr10:36623748 1.00E-21 dispersed
Cre10g1722 Cre-Chr10:31490755 Cre10g2214 Cre-Chr10:36623748 2.60E-22 dispersed
Cre10g1943 Cre-Chr10:34139173 Cre10g2214 Cre-Chr10:36623748 3.40E-26 dispersed
Cre01g0476 Cre-Chr1:4125629 Cre10g2214 Cre-Chr10:36623748 1.80E-41 wgd
Cre10g2214 Cre-Chr10:36623748 Cre02g2330 Cre-Chr2:36784936 1.20E-37 wgd
Cre10g2214 Cre-Chr10:36623748 Cre03g0474 Cre-Chr3:3153121 2.90E-41 wgd
Cre10g2214 Cre-Chr10:36623748 Cre04g0923 Cre-Chr4:27900575 4.00E-38 wgd
Cre10g2214 Cre-Chr10:36623748 Cre07g0681 Cre-Chr7:4608318 3.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54618 PF02701 zf-Dof 3.50E-32 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2214 - - - 0.0