Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2227 ATGACCCCAGATAAAGAACTTAGAAAGTCGGGACATTACATAGATAATTGTTCTTTTGGGGTTCAAGCACAAGAGAGCGCTCATGGGAGGCCTAAATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCCGATCCATCACCAAGTAACATAGCCTCAAGTTCCAGTATTATAACCTCCTCTTCTAATGATGCGAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGACATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCCGAGAAATCATTCTATGAGGTCCTTGGAAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCGATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACGGGAATGGTTACAGTAATACTTCTTATTGTGGTGATGATAACCCTTTTCAAACCGTGAGTGAAGATATACTTCAAATCAGAAGCTCTTTAGGTGATACCATTTCTCCATCATCCAATAGTTCCTCAAATAGTATCATTAGCGGGGCTGATGGGTGGGTGGAATTCTCGAATAATACAATTCGAATTCCTGAGCCTAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATATTGAGGTAAATGGGTCAGCAACTCAGGGTTTGGATGAGGGAACGAGCCAGGTGTATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGCGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAGTCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTCATAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAACTAAAAGTGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTTTAATTAGCTGTGCTCAGGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCTGAGAATGCAACTAAGCTTCATGTCGTAGATTTTGGTATCCTTTACGGCTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGATGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCGCAGCCTGGGTTTCGTCCGGCAGAGAGAGTGGAGGAGACAGGTCGTCGTTTGGCGGCCTATGCAGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTATTACGGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTCGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTCGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAGTCCTAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTCCATTTTTCTGCTATTTTTGATATGCTTGAAACCGTCGTACCTCGCGAGGATTGGGAGAGAATGCTTTTGGAGAGAGAGATCTTTGGCAGGGAGGCCCTTAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTCATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCAAGTTACCACAGAGATTTTCTGATTGATGAAGATAGCAGGTGGATACTGCAAGGATGGAAAGCTATTCAAACTGAAAGAGATTGCTTGAGGACCAAGGGGTTAACTGTGGAGCTGCTGTTTCAAATTTAA 2289 41.72 MTPDKELRKSGHYIDNCSFGVQAQESAHGRPKFQNTIFSHNFQEFDCLLPDPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLADQYSDSLNEELCGDSSNYGNGYSNTSYCGDDNPFQTVSEDILQIRSSLGDTISPSSNSSSNSIISGADGWVEFSNNTIRIPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDIEVNGSATQGLDEGTSQVYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLHSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKAIQTERDCLRTKGLTVELLFQI 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36712493 36714969 + CrPI670011_10g022270.1 Cre10g2227 511529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2227 762 ProSiteProfiles GRAS family profile. 371 751 IPR005202 -
Cre10g2227 762 Pfam GRAS domain family 380 740 IPR005202 -
Cre10g2227 762 MobiDBLite consensus disorder prediction 283 308 - -
Cre10g2227 762 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 351 740 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1190 Cre-Chr4:30551219 Cre10g2227 Cre-Chr10:36712493 2.80E-16 transposed
Cre07g1453 Cre-Chr7:29616524 Cre10g2227 Cre-Chr10:36712493 1.50E-37 transposed
Cre10g0600 Cre-Chr10:5536234 Cre10g2227 Cre-Chr10:36712493 1.60E-35 transposed
Cre10g0686 Cre-Chr10:6513436 Cre10g2227 Cre-Chr10:36712493 1.90E-58 transposed
Cre10g2227 Cre-Chr10:36712493 Cre02g2309 Cre-Chr2:36606469 5.50E-157 wgd
Cre10g2227 Cre-Chr10:36712493 Cre03g0450 Cre-Chr3:2911442 7.70E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54620 PF03514 GRAS 4.60E-111 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2227 K27753 - csv:101205887 1337.01