Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2260 ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCAGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCAGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCCTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTTGATGAGGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCAGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAGCGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAACACAAAAGAATTTACATAGAGAAGAGCGAAATGCCAACAGGGCAAACGATCATCATAATCCATCGAACTCCCTCGCAATGAATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTGGAGTCCTTGAACGTATCGTACGACTTGTCGAACCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAACAGCGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAAAACAATGTCATAGGTGGCTTTTCCGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCCAAGGTAACAATGAAGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA 1428 46.99 MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREERNANRANDHHNPSNSLAMNNPSTSAQQIQDTPAKREPNDMPMGNQVESLNVSYDLSNHPHVGANTNIAGNNSGGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIQGNNEGYVMGGHFSRDVLGGQLLHDFVG 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36943790 36947061 - CrPI670011_10g022600.1 Cre10g2260 511562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2260 475 FunFam BEL1-like homeodomain protein 9 258 320 - -
Cre10g2260 475 MobiDBLite consensus disorder prediction 1 38 - -
Cre10g2260 475 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
Cre10g2260 475 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677(InterPro)
Cre10g2260 475 MobiDBLite consensus disorder prediction 145 164 - -
Cre10g2260 475 MobiDBLite consensus disorder prediction 341 380 - -
Cre10g2260 475 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre10g2260 475 MobiDBLite consensus disorder prediction 345 370 - -
Cre10g2260 475 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 358 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre10g2260 475 CDD homeodomain 255 316 IPR001356 GO:0003677(InterPro)
Cre10g2260 475 Gene3D - 258 320 - -
Cre10g2260 475 SMART prehox3 98 226 IPR006563 -
Cre10g2260 475 Coils Coil 326 346 - -
Cre10g2260 475 SMART HOX_1 255 319 IPR001356 GO:0003677(InterPro)
Cre10g2260 475 Pfam Associated with HOX 103 224 IPR006563 -
Cre10g2260 475 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1946 Cre-Chr10:34169119 Cre10g2260 Cre-Chr10:36943790 3.50E-49 dispersed
Cre10g2260 Cre-Chr10:36943790 Cre11g0897 Cre-Chr11:6157965 4.00E-49 dispersed
Cre03g0599 Cre-Chr3:4845081 Cre10g2260 Cre-Chr10:36943790 6.50E-62 transposed
Cre10g2260 Cre-Chr10:36943790 Cre04g0872 Cre-Chr4:27410263 2.20E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54622 PF07526 POX 5.80E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2260 - - - 0.0