Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g2275 | ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCCGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTCTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCGGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCCGTGGAGGTTGAAAATGAAAATGGGATAACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAACGAATCCAACAACGCCTCCTTGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTTTACTCGCTTCTTGGAATTTAAGAGGAATTTCTATTACTTCCTCAAATGAAGAAGAGGCATTTTCCTTGTGGACCAAAAACAGGAACATGTGTCGTCCTGATGTCGGGGAAGACGAGGCGTGTATGGGATGGGACCTCTCTGTTGTCAAATGGAAACAAAATTCTGTCAGGAAAACTCATCAAACTGTGGCGTGA | 825 | 46.06 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSRPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASLTTTVAASIPSSDSQSFWRGHRFLNFLLASWNLRGISITSSNEEEAFSLWTKNRNMCRPDVGEDEACMGWDLSVVKWKQNSVRKTHQTVA | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 37048316 | 37051127 | - | CrPI670011_10g022750.1 | Cre10g2275 | 511577 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g2275 | 274 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) | |
| Cre10g2275 | 274 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Cre10g2275 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
| Cre10g2275 | 274 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Cre10g2275 | 274 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
| Cre10g2275 | 274 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cre10g2275 | 274 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) | |
| Cre10g2275 | 274 | PANTHER | ZINC FINGER, RING-CH-TYPE | 36 | 215 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g0306 | Cre-Chr4:8610197 | Cre10g2275 | Cre-Chr10:37048316 | 7.70E-08 | dispersed | |
| Cre04g1995 | Cre-Chr4:37330025 | Cre10g2275 | Cre-Chr10:37048316 | 1.60E-19 | dispersed | |
| Cre10g2275 | Cre-Chr10:37048316 | Cre11g2080 | Cre-Chr11:32580622 | 1.20E-10 | dispersed | |
| Cre10g2275 | Cre-Chr10:37048316 | Cre11g1124 | Cre-Chr11:8838846 | 1.30E-44 | wgd | |
| Cre10g2275 | Cre-Chr10:37048316 | Cre03g0418 | Cre-Chr3:2662191 | 2.40E-30 | wgd | |
| Cre10g2275 | Cre-Chr10:37048316 | Cre04g0837 | Cre-Chr4:27091820 | 1.30E-39 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g2275 | - | - | - | 0.0 |