Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2275 ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCCGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTCTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCGGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCCGTGGAGGTTGAAAATGAAAATGGGATAACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAACGAATCCAACAACGCCTCCTTGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTTTACTCGCTTCTTGGAATTTAAGAGGAATTTCTATTACTTCCTCAAATGAAGAAGAGGCATTTTCCTTGTGGACCAAAAACAGGAACATGTGTCGTCCTGATGTCGGGGAAGACGAGGCGTGTATGGGATGGGACCTCTCTGTTGTCAAATGGAAACAAAATTCTGTCAGGAAAACTCATCAAACTGTGGCGTGA 825 46.06 MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSRPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASLTTTVAASIPSSDSQSFWRGHRFLNFLLASWNLRGISITSSNEEEAFSLWTKNRNMCRPDVGEDEACMGWDLSVVKWKQNSVRKTHQTVA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37048316 37051127 - CrPI670011_10g022750.1 Cre10g2275 511577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2275 274 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
Cre10g2275 274 CDD RING_CH-C4HC3_MARCH 107 159 - -
Cre10g2275 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Cre10g2275 274 SUPERFAMILY RING/U-box 104 161 - -
Cre10g2275 274 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
Cre10g2275 274 MobiDBLite consensus disorder prediction 1 25 - -
Cre10g2275 274 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
Cre10g2275 274 PANTHER ZINC FINGER, RING-CH-TYPE 36 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0306 Cre-Chr4:8610197 Cre10g2275 Cre-Chr10:37048316 7.70E-08 dispersed
Cre04g1995 Cre-Chr4:37330025 Cre10g2275 Cre-Chr10:37048316 1.60E-19 dispersed
Cre10g2275 Cre-Chr10:37048316 Cre11g2080 Cre-Chr11:32580622 1.20E-10 dispersed
Cre10g2275 Cre-Chr10:37048316 Cre11g1124 Cre-Chr11:8838846 1.30E-44 wgd
Cre10g2275 Cre-Chr10:37048316 Cre03g0418 Cre-Chr3:2662191 2.40E-30 wgd
Cre10g2275 Cre-Chr10:37048316 Cre04g0837 Cre-Chr4:27091820 1.30E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g828 . . . . Bpe04g01820 Bpe03g01022 Bma04g01279 . Cmo06g00261 Cmo14g00095 . Cma07g01034 . Car07g01016 . . Cpe08g01193 Bhi03g02093 Tan03g0855 Cmetu08g0797 . Hepe04g0791 . . Cla04g00736 Cam04g0750 Cec04g0877 Cco04g0927 Clacu04g0794 Cmu04g0782 Cre04g0837 Cone3ag0384 Cone10ag0353 Cone13ag1373 Cone19ag1368 Lsi01g01511 . . Cme04g02676 Blo07g01162 Blo09g00251 Bda03g01381 Bda05g00947 . . . . Sed02g0773 . Cmo07g01079 Cma06g00260 Cma14g00100 Car06g00229 Car14g00080 Cpe03g00081 Cpe19g00305 Bhi11g01900 Tan08g2063 Cmetu12g1939 . Hepe05g0126 . . Cla10g02055 Cam10g2129 Cec10g2171 . Clacu10g2134 Cmu10g2878 Cre10g2275 Lsi03g02162 Csa03g03129 Chy04g02201 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre11g0982 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.5e-76 281.2
Cre06g1931 . 43 347 C3H Transcription Factor Family AT1G11020 75.3 4.3e-135 478.0
Cre07g1824 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G08750 61.2 3.9e-121 431.8
Cre10g1081 . 1 534 C3H Transcription Factor Family AT3G16090 61.9 1.1e-169 593.6
Cre11g0982 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.8e-73 271.9
Cre08g1481 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.4e-79 293.1
Cre04g1247 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 8.3e-69 257.3
Cre04g1526 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 3.7e-159 558.1
Cre08g1007 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.4e-40 161.8
Cre06g2366 . 30 415 C3H Transcription Factor Family AT1G18470 75.6 4.2e-175 611.3
Cre09g1932 . 121 352 C3H Transcription Factor Family AT1G68200 50.6 2.4e-50 196.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre07g0431 . 1118 1465 C3H Transcription Factor Family AT2G30580 50.9 2.8e-81 299.3
Cre01g0328 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.6e-94 342.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G63780 57.5 6.6e-116 414.5
Cre10g1877 . 1 426 C3H Transcription Factor Family AT3G58030 52.8 2.8e-105 379.4
Cre01g0328 . 35 347 C3H Transcription Factor Family AT4G26580 61.5 5.8e-111 397.9
Cre04g0718 . 69 533 C3H Transcription Factor Family AT5G01960 68.5 1.6e-166 582.8
Cre07g0915 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 4.8e-150 528.1
Cre02g1390 . 1 155 C3H Transcription Factor Family AT2G04240 59.3 1.5e-43 172.9
Cre02g0637 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 5.4e-38 154.5
Cre02g2593 . 1 242 C3H Transcription Factor Family AT5G19430 52.4 3.8e-62 235.3
Cre07g1478 . 130 577 C3H Transcription Factor Family AT5G45290 52.7 5.6e-103 372.1
Cre02g2593 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 2.2e-57 219.5
Cre06g2263 . 131 425 C3H Transcription Factor Family AT5G05810 52.5 4.1e-74 275.8
Cre11g1124 . 53 204 C3H Transcription Factor Family AT5G05830 59.2 2.6e-45 179.1
Cre10g2275 . 70 213 C3H Transcription Factor Family AT5G05830 57.6 4.1e-43 171.8
Cre04g0837 . 451 581 C3H Transcription Factor Family AT5G05830 61.1 9.6e-40 160.6
Cre06g1709 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 2.3e-96 349.7
Cre11g0982 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 5.2e-74 274.6
Cre11g1155 . 476 747 C3H Transcription Factor Family AT3G55530 80.2 2.1e-114 409.1
Cre09g0639 . 27 299 C3H Transcription Factor Family AT1G63900 75.5 1.0e-116 416.8
Cre05g0362 . 26 408 C3H Transcription Factor Family AT2G44580 53.5 6.7e-119 424.5
Cre08g1481 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.9e-41 163.3
Cre05g1763 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.4e-111 397.9
Cre10g1081 . 119 534 C3H Transcription Factor Family AT1G65040 56.0 2.0e-113 406.0
Cre04g1247 . 41 251 C3H Transcription Factor Family AT2G23780 61.6 3.3e-73 271.9
Cre08g1481 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 7.6e-70 260.8
Cre10g1754 . 1 317 C3H Transcription Factor Family AT3G10810 54.2 5.8e-83 305.4
Cre09g2271 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.1e-45 179.1
Cre09g1874 . 18 353 C3H Transcription Factor Family AT1G68070 63.7 3.3e-117 418.7
Cre11g2285 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.9e-51 198.7
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.3e-45 177.9
Cre08g1229 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.9e-112 402.5
Cre10g0275 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.6e-39 157.9
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre04g1144 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 4.3e-54 208.4
Cre10g1934 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.4e-41 164.9
Cre04g0159 . 1 302 C3H Transcription Factor Family AT2G41980 78.8 3.9e-146 514.6
Cre05g1081 . 659 916 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cre02g2680 . 106 402 C3H Transcription Factor Family AT2G41980 71.8 4.0e-127 451.4
Cre09g1760 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.3e-125 446.4
Cre06g0897 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.7e-123 438.7
Cre05g2840 . 158 408 C3H Transcription Factor Family AT2G41980 79.3 6.7e-122 434.1
Cre05g0667 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.8e-95 345.9
Cre10g2149 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.1e-85 313.9
Cre06g2561 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 4.0e-127 451.4
Cre01g1271 . 348 639 C3H Transcription Factor Family AT3G47990 70.2 9.5e-121 430.3
Cre11g2285 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.7e-52 201.4
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cre01g0677 . 38 406 C3H Transcription Factor Family AT3G18930 54.4 3.3e-84 309.3
Cre10g0309 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 7.6e-75 277.3
Cre10g2184 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 2.6e-67 252.7
Cre06g2366 . 34 467 C3H Transcription Factor Family AT1G73950 68.0 2.8e-166 582.0
Cre08g0157 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.9e-39 157.9
Cre09g1874 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 3.3e-74 275.4
Cre10g0593 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.6e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000737 5 3 3 3 4 2 4 2 3 2 3 3 5 2 2 5 3 4 5 2 2 3 3 3 3 3 3 4 3 2 94