Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2275 ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCCGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTCTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCGGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCCGTGGAGGTTGAAAATGAAAATGGGATAACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAACGAATCCAACAACGCCTCCTTGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTTTACTCGCTTCTTGGAATTTAAGAGGAATTTCTATTACTTCCTCAAATGAAGAAGAGGCATTTTCCTTGTGGACCAAAAACAGGAACATGTGTCGTCCTGATGTCGGGGAAGACGAGGCGTGTATGGGATGGGACCTCTCTGTTGTCAAATGGAAACAAAATTCTGTCAGGAAAACTCATCAAACTGTGGCGTGA 825 46.06 MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSRPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASLTTTVAASIPSSDSQSFWRGHRFLNFLLASWNLRGISITSSNEEEAFSLWTKNRNMCRPDVGEDEACMGWDLSVVKWKQNSVRKTHQTVA 274
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 37048316 37051127 - CrPI670011_10g022750.1 Cre10g2275 511577
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2275 274 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
Cre10g2275 274 CDD RING_CH-C4HC3_MARCH 107 159 - -
Cre10g2275 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Cre10g2275 274 SUPERFAMILY RING/U-box 104 161 - -
Cre10g2275 274 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
Cre10g2275 274 MobiDBLite consensus disorder prediction 1 25 - -
Cre10g2275 274 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
Cre10g2275 274 PANTHER ZINC FINGER, RING-CH-TYPE 36 215 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0306 Cre-Chr4:8610197 Cre10g2275 Cre-Chr10:37048316 7.70E-08 dispersed
Cre04g1995 Cre-Chr4:37330025 Cre10g2275 Cre-Chr10:37048316 1.60E-19 dispersed
Cre10g2275 Cre-Chr10:37048316 Cre11g2080 Cre-Chr11:32580622 1.20E-10 dispersed
Cre10g2275 Cre-Chr10:37048316 Cre11g1124 Cre-Chr11:8838846 1.30E-44 wgd
Cre10g2275 Cre-Chr10:37048316 Cre03g0418 Cre-Chr3:2662191 2.40E-30 wgd
Cre10g2275 Cre-Chr10:37048316 Cre04g0837 Cre-Chr4:27091820 1.30E-39 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2275 - - - 0.0