Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2298 ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGCAGCTCGGAAGGACTACCGAGAGCCGCCCCCGGCGCCGCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTATAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGCTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGGGGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCGTCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTTCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACCGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTTTGGGCAGGGCCGTTGATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA 858 53.15 MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTIMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAAVKAFEKGPFEGLGGGANTVNEGYSNTAALGAEIVGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37239567 37242112 - CrPI670011_10g022980.1 Cre10g2298 511600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2298 285 Pfam Major intrinsic protein 45 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 NCBIfam MIP family channel protein 56 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2298 285 SUPERFAMILY Aquaporin-like 47 278 IPR023271 -
Cre10g2298 285 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cre10g2298 285 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cre10g2298 285 FunFam Probable aquaporin PIP1-2 37 285 - -
Cre10g2298 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 284 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cre10g2298 285 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2261 Cre-Chr9:41798059 Cre10g2298 Cre-Chr10:37239567 1.40E-126 dispersed
Cre10g2147 Cre-Chr10:36030815 Cre10g2298 Cre-Chr10:37239567 6.60E-95 dispersed
Cre10g2298 Cre-Chr10:37239567 Cre04g2013 Cre-Chr4:37457803 2.60E-19 wgd
Cre10g2298 Cre-Chr10:37239567 Cre07g0756 Cre-Chr7:5736009 5.10E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2298 K09872 - vvi:100233000 464.536