Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g2298 | ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGCAGCTCGGAAGGACTACCGAGAGCCGCCCCCGGCGCCGCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTATAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGCTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGGGGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCGTCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTTCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACCGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTTTGGGCAGGGCCGTTGATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA | 858 | 53.15 | MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTIMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAAVKAFEKGPFEGLGGGANTVNEGYSNTAALGAEIVGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSK | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 37239567 | 37242112 | - | CrPI670011_10g022980.1 | Cre10g2298 | 511600 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g2298 | 285 | Pfam | Major intrinsic protein | 45 | 273 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | NCBIfam | MIP family channel protein | 56 | 273 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | PRINTS | Major intrinsic protein family signature | 256 | 276 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | PRINTS | Major intrinsic protein family signature | 52 | 71 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | PRINTS | Major intrinsic protein family signature | 216 | 238 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | PRINTS | Major intrinsic protein family signature | 180 | 198 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre10g2298 | 285 | SUPERFAMILY | Aquaporin-like | 47 | 278 | IPR023271 | - | |
Cre10g2298 | 285 | Gene3D | Glycerol uptake facilitator protein. | 37 | 284 | IPR023271 | - | |
Cre10g2298 | 285 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
Cre10g2298 | 285 | FunFam | Probable aquaporin PIP1-2 | 37 | 285 | - | - | |
Cre10g2298 | 285 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 7 | 284 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Cre10g2298 | 285 | CDD | MIP | 52 | 276 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g2261 | Cre-Chr9:41798059 | Cre10g2298 | Cre-Chr10:37239567 | 1.40E-126 | dispersed | |
Cre10g2147 | Cre-Chr10:36030815 | Cre10g2298 | Cre-Chr10:37239567 | 6.60E-95 | dispersed | |
Cre10g2298 | Cre-Chr10:37239567 | Cre04g2013 | Cre-Chr4:37457803 | 2.60E-19 | wgd | |
Cre10g2298 | Cre-Chr10:37239567 | Cre07g0756 | Cre-Chr7:5736009 | 5.10E-124 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g2298 | K09872 | - | vvi:100233000 | 464.536 |