Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2304 ATGATCTTGGCCTTTTCAACTATACTTTGTTCAACAGATGAATTGGATCGCTCTGCTCTACTTGACTTGAAAGGTAGAGTACTGGAGGACCCACTAAAAATCATGAGTTCTTGGAATGATTCCACGCATTTCTGTGAATGGATGGGTGTTACTTGCAACTCAAGCATTAGAAGAGTAGTGGCTTTGGACTTGGAAGCTGGAGATCTAACTGGTTCTCTACCTCCTTCCTTGGGAAATCTCACTTACCTAACTAAAATCAGTTTGGGAGTCAACAAATTGTATGGCCCAATTCCCCAAGAGTTGGGTCGTTTACTTCAATTACGTTTTCTCAATTTATCCTACAATAACTTTGGCGGTGAGTTTCCAGCAAATATAAGTCATTGCAGGGAGTTGGTTGTTTTGGAGATTAGTGGCAATGAATTTGTAGGCCAAATTCCACACCAATTGTCCACATTGACCAAGTTGGAACGATTCATGTTCGGCATCAACAATCTGAGTGGAACTATTCCACCTTGGGTAGGAAATTTTTCTTCGATATTGGCTTTGTCATTTGGGCGGAACAACTTTCATGGAAGCATTCCAAGTGAAATAGGACGTCTATCTAAAATGGAATTCTTCTCAGTTATTTCAAATAAATTGACAGGTACAATGCCAATTTCAATCTACAATATCAGTTCTCTAACTCTCTTTCATTTTACTGAAAATCAATTGGAAGGAAGTCTGCCACCAAATATTGGATTTACTCTTCCCAATCTTCAGACATTTGCTGGTGGTATTAATAATTTTGATGGGCCTATTCCAAAGTCCTTGACTAATATCTCTACCCTTCAAATCTTAGATTTTCCAAATAACAATCTTGTTGGAATGATACCTGATGACATAGGGAGATTAAAACACCTTCAGCGTCTAAATTTTGGATCAAATAGTCTTGGAAGTGGAAAAATTGGTGATTTAAATTTTATTAATTCCTTGGTTAATTGTACTACGCTAAGGATTTTGGGTTTAAATACGAACCATTTTGGAGGACCATTACCTTCGTCCATTGCCAACCTTTCAAACCAGCTACAAGCTATAACCTTGGGTGATAATATGTTAAGTGGAAGCATTCCTTTCGGGATTACAAACTTGGTTAACTTGCAAGTTCTTGCAATGGAAGGCAACATGATGAATGGTAGTATCCCTCCCAATATAGGGAGCCTTAAAAATTTAGTGCTTTTGTACTTGGGTGGAAACGGATTAACTGGGCCAATCCCTTCCTCCATTGGTAACTTAACTTCACTCACCAACCTCTACTTGAGTTATAACAAACATGACGGACGTATACCAACAAGCTTAGGAGAATGCAAAACCCTCCTATCTCTTCAGCTATCTAGTAACAACCTAACCGGCTCCATACCAAAACAAATCTTTGGAATCCTTTCCCTTTCCATCACTTTGGCCTTAGATCATAACTCATTTACTGGTTCATTGCCAAATGAAGTGGGTGGGTTACTTAGTTTATTAGAACTGGATGTATCAGAAAACAAATTATCAGGTGATATTCCTAGCAACCTCGGAAAATGTACTAGCATGGAACGATTGTATCTTGGGGGAAACCAATTTAGGGAAACAATCCCTCAATCTTTAGAAACTTTAAATAGCCTTGTACAACTAAATTTATCAAGAAACAACTTGACAGGTTCGATTCCCCAATTTCTTGGTAAACTTCTATCGCTCGTGTATCTCGATTTATCCTACAATAACTTTGTAGGAAAAATGCCAGAAGAAGGAGTTTTTTCCAACTCAACCATGTTTTCTATCCTGGGGAATAACAATTTGTGTGATGGTTTACAAGAATTACATCTACCTCCATGCACGTCTAATCAAACACATTCATCAAAGTTACTAATCCCTATAGCATCTGCAGTCGCATTCGCTGTTTTTTTGGTCAGCTTCTTTTTTGTGTGTTTTCTCCTTAACAAGTCGAGGAAGGATACTTCAACTTCATCTCCATCTTCATCTTTTGCAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTTAGTAAAGCAACCCACGGATTCTCTATGGATAATTTCATTGGTTCTGGTAGTTTTGGCACTGTGTATAAAGGTGTTCTTTCAAATGATGGATCTATTGTTGCAATTAAAGTTTTGAATCTCCAACAACAAGGTGCTTCCCAGAGTTTTGTTGATGAATGCAACACCCTCTCAAACATACGACATCGAAATCTCCTCAAGATCGTAACTTCTTGCTCAAGTATTGATGTACACGGCAATGAATTTAAAGCTCTAGTTTTCAATTTTATGTCAAATGGAAATCTTGATAGTTGGCTTCATCCAACAAACCAAGGGCACAACCAAAGGAGGTTAAGTCTCATCCAAAGATTGAACATTGCCATTGATATTGCATATGGATTAGACTATCTCCATAATCATTGTGAAACTCCTATTGTTCATTGTGATTTGAAGCCTAGCAACATACTCCTTGACGAAGATATGACAGCTCATGTAGGAGACTTTGGATTAGCTAGATTCATGTTAGAAAGATCAAGTGATCAAATATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATTGGATATATCCCACCAGAGTACGGTACGGGTAGTAGAATTTCCATCGAAGGAGATATCTTCAGCTATGGGATACTGCTACTAGAGATGATCATCGGAAAAAGACCCACCGACAACACCTTTGGCAATGATGTAGATATTCATTTGTTCACTACAAGGGCACTGTCTCAGAATGCCTTGAGCATAATCGACTCTTCAATACTATTTGAAGAAACACGTCATGAAGAAGATGAGGAAGACATGGTACAAGTAACAGCGATGAAGAGCGAAGAAGATCAAAGAGAAATGGTACCAAGATGGATGGAAGAGTGTGTAATCTCGATAATGAGAATTGGCTTGACATGCTCTTTGAAAGCACCCAGTGAGAGAACGTCAATGAATATTGTCGTTAATAATTTGCAAGCAATTAAAAGCTCCTATCTCCAATTTAAAAAGGCATAA 3045 38.1 MILAFSTILCSTDELDRSALLDLKGRVLEDPLKIMSSWNDSTHFCEWMGVTCNSSIRRVVALDLEAGDLTGSLPPSLGNLTYLTKISLGVNKLYGPIPQELGRLLQLRFLNLSYNNFGGEFPANISHCRELVVLEISGNEFVGQIPHQLSTLTKLERFMFGINNLSGTIPPWVGNFSSILALSFGRNNFHGSIPSEIGRLSKMEFFSVISNKLTGTMPISIYNISSLTLFHFTENQLEGSLPPNIGFTLPNLQTFAGGINNFDGPIPKSLTNISTLQILDFPNNNLVGMIPDDIGRLKHLQRLNFGSNSLGSGKIGDLNFINSLVNCTTLRILGLNTNHFGGPLPSSIANLSNQLQAITLGDNMLSGSIPFGITNLVNLQVLAMEGNMMNGSIPPNIGSLKNLVLLYLGGNGLTGPIPSSIGNLTSLTNLYLSYNKHDGRIPTSLGECKTLLSLQLSSNNLTGSIPKQIFGILSLSITLALDHNSFTGSLPNEVGGLLSLLELDVSENKLSGDIPSNLGKCTSMERLYLGGNQFRETIPQSLETLNSLVQLNLSRNNLTGSIPQFLGKLLSLVYLDLSYNNFVGKMPEEGVFSNSTMFSILGNNNLCDGLQELHLPPCTSNQTHSSKLLIPIASAVAFAVFLVSFFFVCFLLNKSRKDTSTSSPSSSFAKEFLPQISYLELSKATHGFSMDNFIGSGSFGTVYKGVLSNDGSIVAIKVLNLQQQGASQSFVDECNTLSNIRHRNLLKIVTSCSSIDVHGNEFKALVFNFMSNGNLDSWLHPTNQGHNQRRLSLIQRLNIAIDIAYGLDYLHNHCETPIVHCDLKPSNILLDEDMTAHVGDFGLARFMLERSSDQISFSQTMSLALKGSIGYIPPEYGTGSRISIEGDIFSYGILLLEMIIGKRPTDNTFGNDVDIHLFTTRALSQNALSIIDSSILFEETRHEEDEEDMVQVTAMKSEEDQREMVPRWMEECVISIMRIGLTCSLKAPSERTSMNIVVNNLQAIKSSYLQFKKA 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37296883 37300026 + CrPI670011_10g023040.1 Cre10g2304 511606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2304 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2304 1014 SMART LRR_typ_2 400 424 IPR003591 -
Cre10g2304 1014 SMART LRR_typ_2 497 521 IPR003591 -
Cre10g2304 1014 SMART LRR_typ_2 104 128 IPR003591 -
Cre10g2304 1014 SMART LRR_typ_2 545 568 IPR003591 -
Cre10g2304 1014 SMART LRR_typ_2 569 594 IPR003591 -
Cre10g2304 1014 Pfam Leucine rich repeat N-terminal domain 16 53 IPR013210 -
Cre10g2304 1014 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515(InterPro)
Cre10g2304 1014 SUPERFAMILY L domain-like 10 310 - -
Cre10g2304 1014 ProSiteProfiles Protein kinase domain profile. 688 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2304 1014 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Cre10g2304 1014 Pfam Leucine Rich Repeat 402 424 IPR001611 GO:0005515(InterPro)
Cre10g2304 1014 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Cre10g2304 1014 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cre10g2304 1014 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Cre10g2304 1014 Gene3D Transferase(Phosphotransferase) domain 1 770 1013 - -
Cre10g2304 1014 Gene3D Ribonuclease Inhibitor 13 171 IPR032675 -
Cre10g2304 1014 Pfam Protein kinase domain 691 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2304 1014 Gene3D Ribonuclease Inhibitor 176 315 IPR032675 -
Cre10g2304 1014 SMART serkin_6 688 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2304 1014 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524(InterPro)
Cre10g2304 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 321 624 - -
Cre10g2304 1014 SUPERFAMILY Protein kinase-like (PK-like) 661 1001 IPR011009 -
Cre10g2304 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 1014 - -
Cre10g2304 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 659 769 - -
Cre10g2304 1014 PANTHER OS04G0122200 PROTEIN 28 1004 IPR051809 -
Cre10g2304 1014 Gene3D Phosphorylase Kinase; domain 1 650 769 - -
Cre10g2304 1014 Gene3D Ribonuclease Inhibitor 316 621 IPR032675 -
Cre10g2304 1014 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 53 320 - -
Cre10g2304 1014 SUPERFAMILY L domain-like 354 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1089 Cre-Chr1:19507503 Cre10g2304 Cre-Chr10:37296883 5.40E-113 dispersed
Cre10g1435 Cre-Chr10:28053768 Cre10g2304 Cre-Chr10:37296883 7.90E-66 dispersed
Cre10g2242 Cre-Chr10:36808938 Cre10g2304 Cre-Chr10:37296883 1.60E-77 dispersed
Cre10g2304 Cre-Chr10:37296883 Cre11g1103 Cre-Chr11:8513437 3.80E-97 dispersed
Cre10g2303 Cre-Chr10:37283586 Cre10g2304 Cre-Chr10:37296883 4.50E-238 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64505 PF00069 Pkinase 7.60E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2304 - - - 0.0