Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2306 ATGGCTTCTTGTTGCTTTGCTATCCTGAATTGCTGTAAAGGAAATAACAGTCCCGAGGAACCCGCAGAAGGAATTGCTGTTACCAACAATGTACGCCTCTTTTCTTATAATTCACTGAGGTCAGCAACTAGGAATTTTCATCCATCAACCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGCACCAATGTTGCAGTCAAATCACTGTCTGCAGAATCAGCTCAGGGAACTCGTGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAACATCTCGTTGAACTGATTGGTTGTTGTGTAGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGGTACAATGAGTAAGCATGTCATTCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACCGCTTTGGGTCTTGCATACCTACATGAGGAAGCTGAATATTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGATAACGTTACTCATGTTAGCACTCGAGTGGCCGGAACTGTTGGATATTTGGCCCCCGAGTATGCACTTTTAGGACAGTTGACAAAGAAGGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAATAGTTAGTGGAAGTAGCAGCAGTAAAACAGCATTTGGAGAAGAGTTGTCAGTGCTCGTGGAATGGACTTGGAAATTAAGACAAGAAGGACGGCTTGTAGAACTAATCGATCCGGAACTGGTCGATTATCCGAAGGCTGAGGTGATGCGTTTCATCACAGTTGCACTCTTCTGTACCCAAGCAGCTGCAAATCAAAGGCCAACCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAGGTACACCTTAATGAAAAACTATTGACAGAGCCAGGAGTATACAAAGGACACAAAACTAGGAAGTTAAATGGTGCTGGTACAAGTTCTGAGGGGACTTCATTCTCCCATGGAGACAGAGGGAAAAAAGCTATGAAGTCTACTATATCTTCACCCCAATTTAATAGCTCAAACAGTCTGACTCAAATGCTTCCTAGGTGTAAAGTGGAGAGAGCATCATCCCATGTTTCAGTGGAGGATCTAAACTGTGAAGAGTGA 1212 42.24 MASCCFAILNCCKGNNSPEEPAEGIAVTNNVRLFSYNSLRSATRNFHPSTRIGAGGYGVVYKGVLRDGTNVAVKSLSAESAQGTREFLTEINMISNIRHQHLVELIGCCVEGTHRILVYEYLENNSLASTLLGTMSKHVILDWPKRAKICLGTALGLAYLHEEAEYSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIVSGSSSSKTAFGEELSVLVEWTWKLRQEGRLVELIDPELVDYPKAEVMRFITVALFCTQAAANQRPTMKQVVEMLSREVHLNEKLLTEPGVYKGHKTRKLNGAGTSSEGTSFSHGDRGKKAMKSTISSPQFNSSNSLTQMLPRCKVERASSHVSVEDLNCEE 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37307713 37310900 - CrPI670011_10g023060.1 Cre10g2306 511608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2306 403 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Cre10g2306 403 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 352 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cre10g2306 403 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
Cre10g2306 403 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Cre10g2306 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2306 403 CDD STKc_IRAK 52 318 - -
Cre10g2306 403 SUPERFAMILY Protein kinase-like (PK-like) 25 316 IPR011009 -
Cre10g2306 403 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524(InterPro)
Cre10g2306 403 FunFam cold-responsive protein kinase 1 17 121 - -
Cre10g2306 403 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2306 403 Pfam Protein tyrosine and serine/threonine kinase 50 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2306 403 SMART serkin_6 46 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2306 403 MobiDBLite consensus disorder prediction 337 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0882 Cre-Chr3:7559766 Cre10g2306 Cre-Chr10:37307713 1.40E-114 dispersed
Cre07g1434 Cre-Chr7:29393672 Cre10g2306 Cre-Chr10:37307713 1.40E-91 dispersed
Cre09g0631 Cre-Chr9:5960346 Cre10g2306 Cre-Chr10:37307713 3.30E-73 dispersed
Cre10g1544 Cre-Chr10:29422633 Cre10g2306 Cre-Chr10:37307713 2.50E-73 dispersed
Cre10g2306 Cre-Chr10:37307713 Cre11g2138 Cre-Chr11:33088320 1.90E-92 dispersed
Cre10g2306 Cre-Chr10:37307713 Cre07g1399 Cre-Chr7:28896595 5.20E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64506 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2306 - - - 0.0