Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2308 ATGGCCGCCACCGCATCCTCCTTCATTGGAACTCGTCTTCCTATTGCCCCATCCGGGTCGGGTCGGGTACACGCCAGATTCTCATTCGGCAGACCAAAAAGCGCACCGAAGAAATCGTCAAAAAAGCCCACTTCGGACCGGCCGCTGTGGTACCCGGGGGCCGTGGCGCCGGAGTGGCTGGACGGAAGCTTGGTGGGGGATTACGGGTTCGACCCGTTTGGGCTGGGAAAACCGGCGGAGTACTTGCAGTTCAATTTGGACTCATTGGACCAGAACTTGGCTAAGAATGTGGCTGGTGATGTGATCGGTACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTGTTTGGGTTGCAGAGGTTTCGCGAGTGTGAGCTGATCCATGGAAGGTGGGCTATGTTGGCTACACTCGGTGCCCTTACTGTTGAGTGGCTCACTGGTGTCACTTGGCAAGATGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCAACATTGATATGGATAGAGGTTCTAGTAATTGGGTACATTGAGTTTCAAAGGAATGCTGAGCTTGATCCAGAGAAGAGACTTTACCCAGGGGGCAAGTACTTTGATCCCCTTGGCTTAGCGGCCGACCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATTAAGCACGCTCGCCTCGCCATGGTCGCGTTCCTCGGTTTTGCTGTTCAAGCTGCTGCCACTGGCAAAGGCCCCCTCAATAACTGGGCAACCCATCTGATCTTCAATTGTTCCGACGCCGTTAAGGAAGAATTCCTCAGGCATTTGGCTCCTCACCGGAAGCTTGCGGTTCCTGTCTATTGTGTACTATCAATTTCTAGTTCCTGA 909 53.8 MAATASSFIGTRLPIAPSGSGRVHARFSFGRPKSAPKKSSKKPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFNLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLIFNCSDAVKEEFLRHLAPHRKLAVPVYCVLSISSS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37320106 37323169 - CrPI670011_10g023080.1 Cre10g2308 511610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2308 302 FunFam Chlorophyll a-b binding protein, chloroplastic 102 281 - -
Cre10g2308 302 MobiDBLite consensus disorder prediction 20 49 - -
Cre10g2308 302 SUPERFAMILY Chlorophyll a-b binding protein 43 267 - -
Cre10g2308 302 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cre10g2308 302 Gene3D Chlorophyll a/b binding protein domain 50 287 - -
Cre10g2308 302 Pfam Chlorophyll A-B binding protein 56 252 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0814 Cre-Chr4:26817728 Cre10g2308 Cre-Chr10:37320106 1.10E-134 dispersed
Cre10g2308 Cre-Chr10:37320106 Cre11g1792 Cre-Chr11:29505023 1.50E-28 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2308 K08915 - rcu:8267514 482.641