Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2310 ATGTTGCAGCAGAACATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGGGTTCGCTGAAGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCGTTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTAATCGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTATGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCCATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGGATCGGCTGACGTGGGGGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCAATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGCAGTGGAAGAATGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTATTACCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGCTTATCTGTTGCGTTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCTATATTGGCTTCATCATCCATTTTACAGGATGGTACGTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATCTTGTCATTGCAACATGTTTCTTCCTAATTAATGGTTACTATCAACAATTTAGGGTGGTCGAGAGTCCGACTAAAGCAACAATAACCAAAATTTACAATTTGTTCGAAGGGATGAATTTGATAATTCAACCCAAAGTCGACGATTTCGGATTCAGATTTGTACGCTTTGTTCAACGTATTTGCTTCATTCCTTTGGTCTTTGGTTGGTGGTTACTCTGGCTTTCTTGCATATCTCCCTGCCTTGTAAGCCATTCAGACTCAGTTCGGTTCGGGACTATGCGGGAAGAAAAGAAGCCAGTAATTGTATGGCGGAATATCGGAAAGCTTGAAGCCTCTGATCGTCGAGTCTTCAACACCACGGACTGTGAACCACTGTGGAATAGCAACAAGCAATTTGGCACCAGTGGTGGTAGTGGTAATGATGGTGATGGAACTAGCTGTAAATTTGCCTGCATTACTGTCGTAGAAAAGCGAAACCGGAAGGAGTTCCTGCCGACGTCGGCTCAGTTGCTTAAGCATCCATTAGCAATTCTGGCTTTGGTGCACAGAGAAGCAACGCTCTTCGCCGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACAGCTCCGCTTGAGCGAATCAAGCTTCTTATGCAGACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAAGTCTATTGGCTTTATCGAGGCAATAAGAACAGTAATAAAGGTGGAAGGAGTTAAAGGACTTTGGAAAGGCAACTTTCCTCAGGTTATACGTATCATACCATATAGTGCTATCCAGCTCTTTGCCTATGAAACTTTCAAGAACCTTTTCAGGGGAGAAGATGGGGAACTTTCTGTGATTGGAAGACTCGCTGCTGGTGCATGCGCTGGCATGACATCCACCTTCATGACATATCCATTAGATGTTTTGAGGTTGCGTATGGCAGTTGACCCTGGGTTTCGAACGGCATCTGAGATTGCCTTAAGTATGCTACGAGAGGAAGGCATTACATCTTACTACAGTGGTCTTGGACCATCCCTTTTTGGCATAGCTCCTTACATTGCCGTGAACTTTTGCATTTTTGACTTGGTAAAAAAGTCTTTGCCAGAGGAAGCTCAAAGGAGAACTGAAACATCTTTATTCACAGCCTTGCTTTCGGCTTCCCTAGCTACACTCATGTGCTATCCTTTGGACACTGTGAGAAGACAGATGCAAATGAAGGGTACACCTTACAATACAGTTTTCGATGCTTTTGCAGGTATATGGGCTGGTGATAGATTTGTTGGATTCTACAGGGGCTTGCTGCCCAACTTCTTGAAGAATTTACCAAGCAGCAGCATCAAGCTTACCACATATGACTTTGTCAAGCGTCTTATTGAGACTAGTGAAAATGAGTACCAGAGAATCATTGAGGAAAATCGCGAAAAGCTTAACCAAAAGTTCACTGATTAA 2691 45.45 MLQQNMDFEQGTSILQNGVVKGSLKHARTAHNMSSSSLRKKSDLTLVSKVRLGCLRQLLVNLQEVVFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTSLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCHSLPMLFPYAGGSADVGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRQLFEADKELDVYDDAVEECPVIGKWSAIAWLVVITLLIALLSEYVVATIEDASETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQDGTSHYMKGLILLLFYLVIATCFFLINGYYQQFRVVESPTKATITKIYNLFEGMNLIIQPKVDDFGFRFVRFVQRICFIPLVFGWWLLWLSCISPCLVSHSDSVRFGTMREEKKPVIVWRNIGKLEASDRRVFNTTDCEPLWNSNKQFGTSGGSGNDGDGTSCKFACITVVEKRNRKEFLPTSAQLLKHPLAILALVHREATLFAAGAVSGAAAKTATAPLERIKLLMQTHGARIAQEGAKKSIGFIEAIRTVIKVEGVKGLWKGNFPQVIRIIPYSAIQLFAYETFKNLFRGEDGELSVIGRLAAGACAGMTSTFMTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFGIAPYIAVNFCIFDLVKKSLPEEAQRRTETSLFTALLSASLATLMCYPLDTVRRQMQMKGTPYNTVFDAFAGIWAGDRFVGFYRGLLPNFLKNLPSSSIKLTTYDFVKRLIETSENEYQRIIEENREKLNQKFTD 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37336169 37349699 - CrPI670011_10g023100.1 Cre10g2310 511612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2310 896 ProSiteProfiles Solute carrier (Solcar) repeat profile. 597 689 IPR018108 -
Cre10g2310 896 Gene3D Mitochondrial carrier domain 597 876 IPR023395 -
Cre10g2310 896 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 425 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cre10g2310 896 PRINTS Mitochondrial carrier protein signature 712 730 IPR002067 GO:0055085(InterPro)
Cre10g2310 896 PRINTS Mitochondrial carrier protein signature 753 771 IPR002067 GO:0055085(InterPro)
Cre10g2310 896 PRINTS Mitochondrial carrier protein signature 796 818 IPR002067 GO:0055085(InterPro)
Cre10g2310 896 PRINTS Mitochondrial carrier protein signature 615 629 IPR002067 GO:0055085(InterPro)
Cre10g2310 896 PRINTS Mitochondrial carrier protein signature 664 684 IPR002067 GO:0055085(InterPro)
Cre10g2310 896 PRINTS Mitochondrial carrier protein signature 602 615 IPR002067 GO:0055085(InterPro)
Cre10g2310 896 Coils Coil 865 892 - -
Cre10g2310 896 SUPERFAMILY Mitochondrial carrier 601 868 IPR023395 -
Cre10g2310 896 Gene3D - 268 424 IPR044880 -
Cre10g2310 896 Gene3D - 120 259 IPR044880 -
Cre10g2310 896 Pfam Sodium/calcium exchanger protein 280 422 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2310 896 Pfam Sodium/calcium exchanger protein 93 249 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g2310 896 ProSiteProfiles Solute carrier (Solcar) repeat profile. 787 871 IPR018108 -
Cre10g2310 896 Pfam Mitochondrial carrier protein 696 783 IPR018108 -
Cre10g2310 896 Pfam Mitochondrial carrier protein 792 874 IPR018108 -
Cre10g2310 896 Pfam Mitochondrial carrier protein 602 692 IPR018108 -
Cre10g2310 896 ProSiteProfiles Solute carrier (Solcar) repeat profile. 697 780 IPR018108 -
Cre10g2310 896 NCBIfam calcium/proton exchanger 76 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cre10g2310 896 FunFam Vacuolar cation/proton exchanger 268 424 - -
Cre10g2310 896 FunFam Envelope ADP,ATP carrier protein 599 877 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0714 Cre-Chr7:5144282 Cre10g2310 Cre-Chr10:37336169 9.80E-37 dispersed
Cre08g1650 Cre-Chr8:28994345 Cre10g2310 Cre-Chr10:37336169 1.20E-37 dispersed
Cre10g0647 Cre-Chr10:6088277 Cre10g2310 Cre-Chr10:37336169 3.30E-91 dispersed
Cre04g0803 Cre-Chr4:26711682 Cre10g2310 Cre-Chr10:37336169 5.80E-145 transposed
Cre10g2310 Cre-Chr10:37336169 Cre03g0393 Cre-Chr3:2385772 9.10E-119 wgd
Cre10g2310 Cre-Chr10:37336169 Cre04g0802 Cre-Chr4:26701840 2.30E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2310 K07300 - csv:101213421 668.692