Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2315 ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGTGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 726 45.73 MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37383209 37385517 + CrPI670011_10g023150.1 Cre10g2315 511617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2315 241 MobiDBLite consensus disorder prediction 164 178 - -
Cre10g2315 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cre10g2315 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 235 IPR013083 -
Cre10g2315 241 FunFam PHD finger alfin-like protein 180 236 - -
Cre10g2315 241 Pfam Alfin 11 136 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cre10g2315 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cre10g2315 241 PANTHER CPG BINDING PROTEIN 8 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cre10g2315 241 SUPERFAMILY FYVE/PHD zinc finger 177 239 IPR011011 -
Cre10g2315 241 MobiDBLite consensus disorder prediction 136 178 - -
Cre10g2315 241 Pfam PHD-finger 188 234 IPR019787 -
Cre10g2315 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cre10g2315 241 SMART PHD_3 187 235 IPR001965 -
Cre10g2315 241 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0950 Cre-Chr10:12917239 Cre10g2315 Cre-Chr10:37383209 4.80E-81 dispersed
Cre10g2315 Cre-Chr10:37383209 Cre11g0655 Cre-Chr11:3648964 3.00E-85 dispersed
Cre07g0775 Cre-Chr7:6122920 Cre10g2315 Cre-Chr10:37383209 9.60E-49 transposed
Cre10g2315 Cre-Chr10:37383209 Cre07g0774 Cre-Chr7:6112809 2.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54625 PF12165 Alfin 6.30E-67 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2315 K26274 - csv:101211970 464.536