Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2339 ATGAACAACACCATCTCGCCGGGAAACATGGCCGCCGGAACCCCATCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGGCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTTAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCGTTTGGCGATCAGTTGATTCCTCTGTGGGGAAAAGGAATTCCAGCTGTGTCTCAAAGTTACTTAATAAACCAAGCCAATATCCCTGAGAGTGGCTACATAAGCAACAATGGAAGTGTAACGCCAAGAATTGAACCCAATATTCCGATGGCTTCGCTTGTGTATTTCCAATTTACTTTTGCTGCGATTACTGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGAGCATACAGCGTTTGGGGCGGAGGGTTTCTGTTTAAATGGGGAGTAATTGATTACTCCGGCGGCTATGTGATTCATCTTTCGTCTGGAATTGCTGGTTTAACAGCGGCTTATTGGGTTGGGCCGAGGATAAAGAGTGACAGAGAGAGGTTTCCCCCGAATAACGTACTGCTGATGTTGGCCGGAGCGGGGCTGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGAGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCTGTGCTGAATACGAACGTGAGTGCGGCGACGAGTCTGCTGGTTTGGACCATATTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAGTTCTAGCTGGGAGTATTCCATGGCTATCCATGATGGTTCTTCATAAAAAGTTGAGTTTCTTGCAGAAGGCTGATGACACGCTTGGTGTATTTCACACGCACGCAGTGGCGGGATTGATGGGCGGGCTTTTAACTGGGCTTTTGGCGGAGCCCACTCTATGCGATCTATACCTACCGGTCACCGGCACACGCGGCGCCTTCTACGGCAAGAACGGCGGCGTTCAGTTCCTGAAACAACTGGCCGGATCCACCTTCATCATAGGATGGAACATCGTGTCAACCACCATAATCCTCCTCTTTATTCGGCTGTTTATGCCCTTAAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCTAGACGGCACGGCAATGCGGCCGCCGCCAATATGGAAGAGGGAACTGGCTCGCCTTATATCAATGGTGCTCGAGGTGTAATCATCGAGTTGTAA 1467 51.33 MNNTISPGNMAAGTPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPAVSQSYLINQANIPESGYISNNGSVTPRIEPNIPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFKWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSIPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPVTGTRGAFYGKNGGVQFLKQLAGSTFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAAANMEEGTGSPYINGARGVIIEL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37568775 37572745 - CrPI670011_10g023390.1 Cre10g2339 511641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2339 488 FunFam Ammonium transporter 8 450 - -
Cre10g2339 488 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre10g2339 488 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre10g2339 488 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre10g2339 488 SUPERFAMILY Ammonium transporter 17 429 - -
Cre10g2339 488 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005886(InterPro)
Cre10g2339 488 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005886(InterPro)
Cre10g2339 488 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005886(InterPro)
Cre10g2339 488 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005886(InterPro)
Cre10g2339 488 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005886(InterPro)
Cre10g2339 488 PANTHER AMMONIUM TRANSPORTER MEP2 15 458 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Cre10g2339 488 Gene3D Ammonium transporter AmtB like domains 2 450 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0354 Cre-Chr4:10579517 Cre10g2339 Cre-Chr10:37568775 7.50E-10 dispersed
Cre08g1250 Cre-Chr8:25690124 Cre10g2339 Cre-Chr10:37568775 1.60E-151 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2339 K03320 - csv:101207321 909.442