Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2340 ATGGCTATGGCAGCTCCTCTGGCTCTTCTTTCTGTGTTCCTCCTTTTGGCTGCCCATTCAGTGCAGTCTTCATTTCCCTACCATGGATTCAACGATACAGGACTTGATCTTGAGGGAGCTTTTGTTTTGAAGCCATCTGGTGCATTGAGGCTCACCAATAGATCGCATAATGTTATCGGCCACGCGTTCTATCCATCTTCATTCCAGATGTTTGATCAAAGTTCTGACTCATTTCCGAATGTTTCATCATTCAGCACAACTTTTGTTTTTGCAATTGATCCTTCGAGCCCCGGCCAAGGCGGGTACGGCTTGGCCTTTGCCATAGCTCCATCAACCCAATTTGCAGGTGCAGACAGTGGACACTTTCTTGGATTGTTCAACTCTTCCAACAATGGTAACACTTCAAACCATATATTTGCTGTTGAATTTGACACTGTAAATGGGCATGATGAAGAAAGGAACACCAAAGGAAACCATATTGGAATCAACATCAATGGCATTTCATCAGTTGCATCCAAACCTGCTTCTTATTCCGACTATGGCGAAGCTCATGAACACGACTTGCAAATGGATTCTGGTGATCCTATCATCGCTTGGATTGAATATGATGGCCCCAACAGAATGGTGAACGTTACAATAGCTCCCTGGAAGCTTAAAAGAAAACCAACAAAGTCACTCCTTTCCCGTCGGATTGAACTGAAACCTGTTCTAAAGGAAAAAATGTTCGTCGGCTTCTCGGCTTCAACCGGAGATAAAACAAGCTCTCATTACATTTTGGGATGGAGTTTTGCAATGAATGGACCAGCGCCTCCCCTGAATTACTCTCTTCTTCCCAACCCACCAAAAGAGCAAGATTCTCTTTCTTCACCAACCAACTCCCACTTCAAGGTTTTTATAGCAGTTATATCTGTTGTAGCCATTCTAGGAATTCTTTTCTTAGCTTTCTGGTACAGAAAAACGTGGCAAACTGAGAGGCTTGAGGATTGGGAAAGAGACTGTCCTCACAGATTCCACTACAGAGACCTTTACACAGCAACAAAAGGATTTAAAAGTAGCGAGCTAATTGGAATTGGGGGATTTGGCTCAGTGTATAAAGGTCAGATACATTCAACTGGAATTGAAATTGCAGTGAAGAGAGTAAGAAGAAACTCAGGCCAAGGAATGAAAGAATTCGCAGCAGAAATCGAAAGCTTAGGTCGATTAAGACACAAGAACTTGGTGAATCTTCAAGGTTGGTGCAAGAAAAAGAACGATCTACTCATAGTTTACGATTATATTCCAAATGGAAGCCTCTACTCTCTTCTATATCATCCAAAAAACAACTATATATTGAATTGGAAACAAAGATTCAACATCCTCAAAGGAATTGCAGCAGGACTATTGTACCTTCACGAAGAGTGGGAGCAAGTAGTGATCCATCGAGATGTGAAGCCAAGCAATGTTCTAATAGACGCCGACATGAATCCCCGATTGAGCGATTTCGGTCTAGCCAGGCAATACGACCACGACGAAGCATCACACACGACCGGCGTCGTCGGCACGATCGGCTACATAGCGCCGGAGTTGGTTCGTACAGGGAAGGCTTCGAAAAACACGGATGTGTTTGGGTATGGAGTTCTGCTTCTGGAAGTGGCGTGTGGAAGAAAACCTCTGGAATCGGAACAGTTCATATTGGTGGATTGGGTGATGGAGCAGTATGAAAGCGGAGAAATTCTTAATGCGGCTGATCCGAAGTTGAATTCAGTTTATGAGGATGAGGAGATGGAGATGGTTCTGCAATTGGGGCTTCTTTGTACTCACCAGATAGCCGAAGCTCGGCCGACGATGAGACAGGTGACGAGAATCCTTCACGGCGACGATCAAATTCCGGCGGTGGACGGCTGGGCTTGTTCTAAAAGCTACTCGAAATTTAACTCGAGAATGACTGAAGTGATTTCAGCAACTTCTTACCGTTCGTCGTCCATTGGCGATATTTCTTCAAGTTCCATAGATGCAGGCCGATAA 2004 44.31 MAMAAPLALLSVFLLLAAHSVQSSFPYHGFNDTGLDLEGAFVLKPSGALRLTNRSHNVIGHAFYPSSFQMFDQSSDSFPNVSSFSTTFVFAIDPSSPGQGGYGLAFAIAPSTQFAGADSGHFLGLFNSSNNGNTSNHIFAVEFDTVNGHDEERNTKGNHIGININGISSVASKPASYSDYGEAHEHDLQMDSGDPIIAWIEYDGPNRMVNVTIAPWKLKRKPTKSLLSRRIELKPVLKEKMFVGFSASTGDKTSSHYILGWSFAMNGPAPPLNYSLLPNPPKEQDSLSSPTNSHFKVFIAVISVVAILGILFLAFWYRKTWQTERLEDWERDCPHRFHYRDLYTATKGFKSSELIGIGGFGSVYKGQIHSTGIEIAVKRVRRNSGQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGSLYSLLYHPKNNYILNWKQRFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDADMNPRLSDFGLARQYDHDEASHTTGVVGTIGYIAPELVRTGKASKNTDVFGYGVLLLEVACGRKPLESEQFILVDWVMEQYESGEILNAADPKLNSVYEDEEMEMVLQLGLLCTHQIAEARPTMRQVTRILHGDDQIPAVDGWACSKSYSKFNSRMTEVISATSYRSSSIGDISSSSIDAGR 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37577691 37579694 - CrPI670011_10g023400.1 Cre10g2340 511642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2340 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 282 IPR013320 -
Cre10g2340 667 FunFam L-type lectin-domain containing receptor kinase S.4 426 628 - -
Cre10g2340 667 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2340 667 CDD STKc_IRAK 355 616 - -
Cre10g2340 667 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524(InterPro)
Cre10g2340 667 SMART serkin_6 349 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2340 667 CDD lectin_legume_LecRK_Arcelin_ConA 24 267 IPR001220 GO:0030246(InterPro)
Cre10g2340 667 Pfam Protein kinase domain 350 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2340 667 SUPERFAMILY Protein kinase-like (PK-like) 333 621 IPR011009 -
Cre10g2340 667 PANTHER - 35 623 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Cre10g2340 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2340 667 FunFam serine/threonine-protein kinase PBS1-like 316 425 - -
Cre10g2340 667 Gene3D - 21 269 - -
Cre10g2340 667 Pfam Legume lectin domain 23 275 IPR001220 GO:0030246(InterPro)
Cre10g2340 667 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cre10g2340 667 FunFam L-type lectin-domain containing receptor kinase V.9 21 271 - -
Cre10g2340 667 Gene3D Transferase(Phosphotransferase) domain 1 426 635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0112 Cre-Chr8:2409576 Cre10g2340 Cre-Chr10:37577691 1.40E-60 dispersed
Cre08g0113 Cre-Chr8:2410279 Cre10g2340 Cre-Chr10:37577691 1.20E-128 dispersed
Cre08g0119 Cre-Chr8:2503605 Cre10g2340 Cre-Chr10:37577691 4.10E-90 dispersed
Cre08g0120 Cre-Chr8:2504328 Cre10g2340 Cre-Chr10:37577691 5.70E-97 dispersed
Cre10g2156 Cre-Chr10:36108561 Cre10g2340 Cre-Chr10:37577691 5.50E-98 dispersed
Cre10g2241 Cre-Chr10:36800090 Cre10g2340 Cre-Chr10:37577691 2.10E-152 dispersed
Cre10g2340 Cre-Chr10:37577691 Cre07g1603 Cre-Chr7:31509250 4.80E-64 dispersed
Cre10g2340 Cre-Chr10:37577691 Cre10g2341 Cre-Chr10:37582573 2.70E-240 tandem
Cre08g0114 Cre-Chr8:2411245 Cre10g2340 Cre-Chr10:37577691 9.40E-19 transposed
Cre10g0976 Cre-Chr10:13849566 Cre10g2340 Cre-Chr10:37577691 3.40E-67 transposed
Cre10g2340 Cre-Chr10:37577691 Cre11g1102 Cre-Chr11:8506121 4.20E-36 wgd
Cre10g2340 Cre-Chr10:37577691 Cre04g1943 Cre-Chr4:36934618 1.60E-36 wgd
Cre10g2340 Cre-Chr10:37577691 Cre07g0793 Cre-Chr7:6643673 6.10E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64508 PF00069 Pkinase 8.30E-51 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2340 - - - 0.0