Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2345 ATGGGAAAAAGCCACAACCCTCTGAGTGAATTTCAGGTGCACCCACTTCAGTTCATGCAGATTCTTGCACCGAAAACAGCTGATTGGTGCTCCAAATCACCAAATACGAACAGAAAATTCAAGAACCAACAATGGAAAAGCTGTTCTTCATACCTCATTGCTCTCTTTTTTGCTCATCTTTTGGCTGTTTCCCTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGTACGAACTCATCGATCTAAAAGGAGCTTTGCATAGCTGGAATGGCAGCAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGCCAGGTTATCGCTATACAGCTTCCATGGAAGGCTCTTGCTGGCCGGATTTCCGACAGGATTGGACAGCTCCGGGAACTTCGGAAACTCAGCCTCCATGACAACATGATCTCCGGTGCGGTCCCTCGGTCCCTGGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACAATTGGTAACCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTACTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGCTTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCTATCCCAAGTAGTTTTACACAGTCGTTTTCTCTTATAATTCTTGCTCTTCAGCACAATAATATTTCTGGAACCGTCCCAGACTCTTGGGGAGGTCTTGGAAATAGAATTTGCCCACTTGGGGTTTTAACACTTGATCATAATGCTATATATGGAGCAATTCCAGCTTCTTTGAGTAAGTTGGAATGGCTTCAAGAGATTTCCATCGGGGACAATAAGATCTCTGGGGCTATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTCTGGATTTGTCAAACAACGCCATTAGTGGCGGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTCATTGAATGTTGAAAATAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAAATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACCTCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCGGTTCCAGTTCTTCTATCGAATAAGTTCAATGCGAGCTCTTTCCTAGGGAACCTTCAACTGTGTGGTTTTAGTGCTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACAACTCCATCAACTGAGGTACTGAAACCGCATCGCCACCGCAGACTTAGTCTAAAGGACATAATTCTGATAGCTGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGGAAACTGCTGCGAGAAGCATCGAGAAGGCAGCACCGGGCAGCACCGATGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGACCTTTTGTGTGCGACTGCGGAGATCATGGGCAAAAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGAAATGAAGTTGCGGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTTGAAGCCGAAGTTGCAGGACTCGGAAAAATTAGACATCCGAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCCAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGACCGGAAACCACAGTTGATTGGCCAACGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGACGATCAGACCAATGTTCATATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAACCACAACAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACAGGAAAGTCTCCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACCCAAAATATTGGTGATGAACTGTTGAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCATCACCAGCTGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAAATTAATGCTTCTACTTCCGGTGACGATGGTTTCAAAAACCAACCAGCAAATGAATAG 2574 44.21 MGKSHNPLSEFQVHPLQFMQILAPKTADWCSKSPNTNRKFKNQQWKSCSSYLIALFFAHLLAVSLRPVTGQMWDGVAVTQGDFQALQAIKYELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNMISGAVPRSLGFLPNLRGVYLFNNRLSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLLRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGLGNRICPLGVLTLDHNAIYGAIPASLSKLEWLQEISIGDNKISGAIPSEIGRLKRLRLLDLSNNAISGGFPSSFSNLSSLESLNVENNRLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFLGNLQLCGFSASTPCLPASSPHNITTPSTEVLKPHRHRRLSLKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAAKETAARSIEKAAPGSTDVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFEAEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNVHIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEINASTSGDDGFKNQPANE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37620307 37623070 - CrPI670011_10g023450.1 Cre10g2345 511647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2345 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 458 - -
Cre10g2345 857 Gene3D Ribonuclease Inhibitor 79 267 IPR032675 -
Cre10g2345 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Cre10g2345 857 SUPERFAMILY L domain-like 105 462 - -
Cre10g2345 857 CDD STKc_IRAK 575 840 - -
Cre10g2345 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 284 845 IPR052451 -
Cre10g2345 857 FunFam Leucine-rich repeat receptor-like protein kinase 555 645 - -
Cre10g2345 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 271 338 - -
Cre10g2345 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Cre10g2345 857 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 270 - -
Cre10g2345 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2345 857 FunFam Leucine-rich repeat receptor-like kinase 82 187 - -
Cre10g2345 857 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515(InterPro)
Cre10g2345 857 Gene3D Ribonuclease Inhibitor 268 465 IPR032675 -
Cre10g2345 857 FunFam Pollen receptor-like kinase 1 646 851 - -
Cre10g2345 857 PRINTS Leucine-rich repeat signature 196 209 - -
Cre10g2345 857 PRINTS Leucine-rich repeat signature 317 330 - -
Cre10g2345 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2345 857 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Cre10g2345 857 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Cre10g2345 857 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Cre10g2345 857 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Cre10g2345 857 Pfam Leucine Rich repeats (2 copies) 170 207 IPR025875 -
Cre10g2345 857 Gene3D Transferase(Phosphotransferase) domain 1 647 853 - -
Cre10g2345 857 SMART LRR_typ_2 413 436 IPR003591 -
Cre10g2345 857 SMART LRR_typ_2 145 168 IPR003591 -
Cre10g2345 857 SMART LRR_typ_2 341 365 IPR003591 -
Cre10g2345 857 SMART LRR_typ_2 317 340 IPR003591 -
Cre10g2345 857 SMART LRR_typ_2 169 192 IPR003591 -
Cre10g2345 857 SMART LRR_typ_2 193 217 IPR003591 -
Cre10g2345 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0878 Cre-Chr9:8779490 Cre10g2345 Cre-Chr10:37620307 1.40E-66 dispersed
Cre10g2345 Cre-Chr10:37620307 Cre11g0754 Cre-Chr11:4739809 1.70E-74 dispersed
Cre03g1105 Cre-Chr3:10582813 Cre10g2345 Cre-Chr10:37620307 7.00E-55 transposed
Cre03g1688 Cre-Chr3:33639156 Cre10g2345 Cre-Chr10:37620307 4.70E-55 transposed
Cre07g0859 Cre-Chr7:7200814 Cre10g2345 Cre-Chr10:37620307 1.50E-166 transposed
Cre10g2345 Cre-Chr10:37620307 Cre04g1942 Cre-Chr4:36928772 7.80E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64510 PF07714 PK_Tyr_Ser-Thr 1.70E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2345 - - - 0.0