Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2352 ATGAATAACATAAATCAAACGATAAATACACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCTACTACTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGGTTTACGATCCATCTTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATGCCGGTGAGGCCGTCTGCCATCGGTAGTCACTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATAGGAGCAGAAGCATCATCATTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG 1428 45.59 MNNINQTINTLAGGSSDNRTNNFGMEVPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPMPVRPSAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37666503 37669229 + CrPI670011_10g023520.1 Cre10g2352 511654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2352 475 SMART WRKY_cls 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 SMART WRKY_cls 318 377 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 MobiDBLite consensus disorder prediction 276 290 - -
Cre10g2352 475 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 383 IPR044810 GO:0003700(InterPro)
Cre10g2352 475 Gene3D WRKY domain 305 371 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 MobiDBLite consensus disorder prediction 1 24 - -
Cre10g2352 475 MobiDBLite consensus disorder prediction 228 275 - -
Cre10g2352 475 SUPERFAMILY WRKY DNA-binding domain 166 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 FunFam WRKY transcription factor 159 229 - -
Cre10g2352 475 Gene3D WRKY domain 156 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g2352 475 MobiDBLite consensus disorder prediction 219 299 - -
Cre10g2352 475 FunFam WRKY transcription factor 33 305 371 - -
Cre10g2352 475 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0335 Cre-Chr3:1785502 Cre10g2352 Cre-Chr10:37666503 3.70E-89 dispersed
Cre10g2178 Cre-Chr10:36326157 Cre10g2352 Cre-Chr10:37666503 1.70E-47 dispersed
Cre10g2352 Cre-Chr10:37666503 Cre11g0945 Cre-Chr11:6767412 3.60E-66 dispersed
Cre10g2352 Cre-Chr10:37666503 Cre02g2227 Cre-Chr2:35905384 1.90E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54627 PF03106 WRKY 9.50E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2352 K13424 - csv:101205651 806.979