Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2379 ATGCTTTTCAAACTATTCCTCATTCTTGTCCTAGCTCTAGCTCCTGCTTCCGTTTCTGCTTTGGACACTGTTTTCAACGACGACGTTTTGGGATTGATAGTCTTCAAAGCTGGCCTTCAAGACCCTATGGGTAAATTGGTAACATGGAACGAGGACGATGAAACTCCCTGCAATTGGTTTGGTGTCAAATGCAATCCTAAGACCAATAGGGTCTCTGAGCTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATTGATCGTGGACTCCTAAGGTTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACCATCAACTCTGCTCTTTCTCACCTTGTAAATTTGCAAGTCATTGATTTCAGTGACAACAGTTTATCTGGACCCATTCCTGAACAGCTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAACATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGATTCTTAACTTCTCCTCCAACCACCTTTCTGGAAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGCTTCAGTCTCTGGATTTCTCTAACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGATTGTCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTACTTCTAAAATCAATCGATTTTAGTGAGAATATCCTTTCTGGTGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCCAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTGCTGAAGAAGTTTAATGTATCCACGAACTATTTAACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCATTTGACTGGCAATCTCCCTACATGGACCTTTAGGGCAGCTATGCCAAGTGTTCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCAGCCCCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAACATATCCAGAAACAATCTCGTGGGTTCTATTCCGGGGAGCATTGGTGAACTAAAATCAGCATTTGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGCATCCCTGCTGAAATTGGAGGAGCGATCTCACTCAAGGAGTTGAGGCTGAAGAAGAACTCCCTCACTGGGGAAATCCCAGTCAACATTGACAAATGCTCCTTGTTAACGTCATTGATTCTTTCTCACAACAACCTAACAGGCTCAATTCCTGCTTCCGTTGCAAACCTCTCCAACCTTGAAGATGTAGACTTGTCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTCAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCTGTCCATCCAAAACCGATTGTCCTAAACCCAAACTCTTCTGATACCAATGGAAATTCCCCCTCCCACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATAATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATGTTCAAGCAAGGTCGTCACAGTCACGGTCTGCTGCTCTTGTATTGTCTGCCGGGGAGGACTTTAGCTGCTCCCCAAAAACTAATCCAGGCTACGGAAAGCTGATCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTCGGTCGAGGTGGATTTGGGGTTGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGTTGACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGATGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAGTATCATTCACTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTAGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCAATCGAACTTCCGTATTGAAGAGGCCATTCCTGTAATGAAACTAGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCAGACATGAATGAGGTGGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGTTGACGAGGAGTTGGAATGA 2883 43.6 MLFKLFLILVLALAPASVSALDTVFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLVNLQVIDFSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGLQSLDFSNNLLEGQIPPGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQLLKKFNVSTNYLTGNLPESMANCNNLLSIDASHNHLTGNLPTWTFRAAMPSVPFSSYRLGENLSSPAPFQGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNNLVGSIPGSIGELKSAFALDFSDNQLNGSIPAEIGGAISLKELRLKKNSLTGEIPVNIDKCSLLTSLILSHNNLTGSIPASVANLSNLEDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNVQARSSQSRSAALVLSAGEDFSCSPKTNPGYGKLIMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWRQRFKIVLGMAKGLAYLHHNSIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVEQCVDERLQSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37855876 37859063 - CrPI670011_10g023790.1 Cre10g2379 511681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2379 960 Gene3D Ribonuclease Inhibitor 363 572 IPR032675 -
Cre10g2379 960 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 671 753 - -
Cre10g2379 960 SUPERFAMILY L domain-like 43 352 - -
Cre10g2379 960 Gene3D Phosphorylase Kinase; domain 1 668 753 - -
Cre10g2379 960 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cre10g2379 960 SUPERFAMILY L domain-like 378 562 - -
Cre10g2379 960 Pfam Protein tyrosine and serine/threonine kinase 679 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2379 960 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 405 427 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 478 499 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 501 523 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 95 116 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 382 403 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 Pfam Leucine Rich Repeat 265 285 IPR001611 GO:0005515(InterPro)
Cre10g2379 960 PANTHER OS05G0588300 PROTEIN 379 470 IPR050994 -
Cre10g2379 960 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Cre10g2379 960 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 305 573 - -
Cre10g2379 960 CDD STKc_IRAK 683 949 - -
Cre10g2379 960 SMART LRR_typ_2 213 237 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 92 115 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 116 140 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 189 212 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 523 547 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 499 522 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 285 309 IPR003591 -
Cre10g2379 960 SMART LRR_typ_2 403 427 IPR003591 -
Cre10g2379 960 ProSiteProfiles Protein kinase domain profile. 677 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2379 960 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 26 304 - -
Cre10g2379 960 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Cre10g2379 960 Gene3D Ribonuclease Inhibitor 188 362 IPR032675 -
Cre10g2379 960 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 754 955 - -
Cre10g2379 960 SUPERFAMILY Protein kinase-like (PK-like) 681 949 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0900 Cre-Chr7:8102541 Cre10g2379 Cre-Chr10:37855876 2.60E-161 dispersed
Cre07g1931 Cre-Chr7:34763393 Cre10g2379 Cre-Chr10:37855876 1.10E-22 dispersed
Cre10g0574 Cre-Chr10:5262899 Cre10g2379 Cre-Chr10:37855876 6.10E-83 dispersed
Cre10g2379 Cre-Chr10:37855876 Cre11g2123 Cre-Chr11:32932392 1.80E-51 dispersed
Cre10g2379 Cre-Chr10:37855876 Cre11g1047 Cre-Chr11:7911601 6.00E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64513 PF07714 PK_Tyr_Ser-Thr 1.10E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2379 - - - 0.0