Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g2391 ATGAAAGTCTGGAACAACAATCCCATCTCTCCCCCGAGGTCTGCCACTGCTGCTGTCACTGTCACTGTCAATTCTACAACTACAACAACCATTGCAACAGTGATTTGTCCATTTATCGCTCTTTGCCACACCAAACTAAGTGGAGTCGAGATGGGCAACTGCGGTACTAGAGAAGAGTCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTCGTCTTCCATGGCTGTGAAAAACGCCAACAACAATGCTACAGATAAAAGGCACATTCATAACCGGTCCATATCAGATCTAAGCGATCCTTCAACCCCTCGCAACCTCGAGGACTTTAGAAAGAATTCGGTGCTTTACACACATGTTATCGCCTTCACATTATACGAGCTGGAGACGATCACCAAGAGTTTCCGCTCCGATTACATTCTCGGAGAGGGCGGTTTTGGAACTGTTTATAAAGGCTACATTGATGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTCGCTGTCAAGGTTCTCAACAAGGAAGGCCTCCAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACATCCGAACCTTGTCAAGTTGATTGGTTACTGCTGCGAGGATGATCACCGATTACTTGTCTACGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCGTTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCGGCCAAGGGACTTGCTTTCCTTCATAATGCTGAACGGCCCGTTATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTACACAGCTAAGCTCTCTGATTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACGCATGTTTCTACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGGCACTTGACAGCAAGGAGTGATGTATACAGTTTCGGCGTTGTTCTTCTGGAGCTTTTGACGGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAACTAAATGACAAGAGGAAGTTGCTACAAATAATTGACCCTAGATTGGAAAGTCAATACTCGATAAGGGCAGCACAGAAGGCCTGCAGCCTAGCGTACTATTGCCTGAGCCAGAATCCAAAAGCAAGACCATTAATGAGCGATGTTGTTGAAACTCTGGAACCATTGCAGAGCGGTACCGATGCAATTGAATATTCATCAACGGGAACTAGTCCATTTGTTAGGGGTGGCGTCCCTGATTACAGGATGCGGCAAAGGTTTATCGACAATGTTGGTTCGGGGGCTAGTTGCCGGTCTCCTAACCCCAACTGTTCCCCGAGCGGCCCTGCCGCATGTAGGGTTAGATGA 1431 46.89 MKVWNNNPISPPRSATAAVTVTVNSTTTTTIATVICPFIALCHTKLSGVEMGNCGTREESAVVSNAQVQQLHTSSSMAVKNANNNATDKRHIHNRSISDLSDPSTPRNLEDFRKNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLESQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGTDAIEYSSTGTSPFVRGGVPDYRMRQRFIDNVGSGASCRSPNPNCSPSGPAACRVR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37940700 37957652 + CrPI670011_10g023910.1 Cre10g2391 511693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g2391 476 Pfam Protein kinase domain 141 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2391 476 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Cre10g2391 476 Gene3D Phosphorylase Kinase; domain 1 101 219 - -
Cre10g2391 476 PANTHER OS01G0588500 PROTEIN-RELATED 112 418 IPR050823 -
Cre10g2391 476 FunFam Serine/threonine-protein kinase BIK1 103 219 - -
Cre10g2391 476 FunFam Probable serine/threonine-protein kinase PBL8 220 432 - -
Cre10g2391 476 ProSitePatterns Protein kinases ATP-binding region signature. 143 172 IPR017441 GO:0005524(InterPro)
Cre10g2391 476 ProSiteProfiles Protein kinase domain profile. 137 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g2391 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g2391 476 Gene3D Transferase(Phosphotransferase) domain 1 220 430 - -
Cre10g2391 476 CDD STKc_IRAK 143 417 - -
Cre10g2391 476 MobiDBLite consensus disorder prediction 84 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2002 Cre-Chr6:27557887 Cre10g2391 Cre-Chr10:37940700 6.00E-119 dispersed
Cre07g1488 Cre-Chr7:30122264 Cre10g2391 Cre-Chr10:37940700 6.50E-120 dispersed
Cre09g0094 Cre-Chr9:1184326 Cre10g2391 Cre-Chr10:37940700 2.20E-107 dispersed
Cre10g2391 Cre-Chr10:37940700 Cre11g0640 Cre-Chr11:3552540 3.70E-127 dispersed
Cre03g1736 Cre-Chr3:34154283 Cre10g2391 Cre-Chr10:37940700 4.10E-129 transposed
Cre11g1560 Cre-Chr11:25254329 Cre10g2391 Cre-Chr10:37940700 2.00E-126 transposed
Cre10g2391 Cre-Chr10:37940700 Cre04g0731 Cre-Chr4:25517845 1.70E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64514 PF00069 Pkinase 9.90E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g2391 - - - 0.0